Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g05079 | ATGTTACTACTATTACTACGCACTGCGGCATCTGGTGCTGTCACATATTCATGCAAATGCAAGGCACCATCACTAAGAACAAGAACCCGAACCCTTATGCATCTTTTCCTTCCAATTCATCCCAACACCAGCATCAATTCCACTATCCTTTGTTCTTCATCCTCACTCAATGATGACTCATTTTCTAACCCTAAACCAACAACCAAGTTGGGTTACACTCCTCCAGAGGAACTCTTTGGCCTCGACGTTGAACTCAACCCAAGCAAAACTAACTCTCAGACACAAGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAAAGAGCTTCCTTGTCCGAGTTGCCGGGGAAGGGGTTATACTCCGTGTACAGAATGTGGAATAGAAAGATCAAGATCAGATTGTCCAAAATGTAACGGAAAGGGTATAGTGACTTGCCCCCAGTGCTCTGGAGAATGTGTTATATGGGAAGAATCAATTGATGAGAAACCGTGGGAGAGAGCCCGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTGGGATTAAAGATTAGTCGTTCATTGAAAAGTCTTAATGCGAAAACTGGTCTATTTAGCAACCGAATGAAGATGATCCACCAGGATCCCAAGCTTCAGGCGCAAAGAGTGGCTGCTATTAAGAGAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCAAGACTATGAAAGCTTTCTTTAGTGATCCGATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGTCAAAACTGTGGACGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTCGGTTGACCGGCGATTCACATGCAAATTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGATAAGCCACGACAATGGTAGAGTTATAAAACACAATAGGTGTAAAATATGTCGCCAATATGGCCATAACCAGAGGACATGCCCTCAAGTTGTTCCCAGCAAAAGAAGGGACACTCTCTTGAATAAAGCATACAAGTGTAGGTTGTGCCACAAAGAGGGACACAATATTAGGACATGTCCTAGCAGAGTTGTTACTGAAAATCCTCAAGATCAGTAG | 1209 | 0.4318 | MLLLLLRTAASGAVTYSCKCKAPSLRTRTRTLMHLFLPIHPNTSINSTILCSSSSLNDDSFSNPKPTTKLGYTPPEELFGLDVELNPSKTNSQTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCPQCSGECVIWEESIDEKPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKMIHQDPKLQAQRVAAIKRAKGTIAARKHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSSVDRRFTCKLCGEKGHNRRTCNKLKISHDNGRVIKHNRCKICRQYGHNQRTCPQVVPSKRRDTLLNKAYKCRLCHKEGHNIRTCPSRVVTENPQDQ | 402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g05079 | 402 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | - | - | |
| Arst3g05079 | 402 | Pfam | Zinc knuckle | 375 | 391 | IPR025829 | - | |
| Arst3g05079 | 402 | SUPERFAMILY | Retrovirus zinc finger-like domains | 284 | 330 | IPR036875 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | SUPERFAMILY | Retrovirus zinc finger-like domains | 337 | 393 | IPR036875 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | ProSiteProfiles | Zinc finger CCHC-type profile. | 287 | 302 | IPR001878 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | SMART | c2hcfinal6 | 376 | 392 | IPR001878 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | SMART | c2hcfinal6 | 344 | 360 | IPR001878 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | SMART | c2hcfinal6 | 313 | 329 | IPR001878 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | SMART | c2hcfinal6 | 286 | 302 | IPR001878 | GO:0003676|GO:0008270 | |
| Arst3g05079 | 402 | Gene3D | - | 283 | 330 | - | - | |
| Arst3g05079 | 402 | Gene3D | - | 340 | 400 | - | - | |
| Arst3g05079 | 402 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 64 | 328 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g05079 | Arst-Chr3 | 126157662 | 126161088 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g05079 | 57 | 398 | C2H2 Transcription Factor Family | AT5G20220 | 62.108 | 7.66e-157 | 446 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g05079 | - | - | gmx:100800156 | 581.252 |