Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05077 ATGGCATTAAAAAATGAAATTTTGTTGTTGTATTTTGTGTGTTTGGCATTAACATGCATTGATGCTAACATCCTTGAGAACGATAAGTACTGGACGAACCATGAACAAGAGTTCGATGGTTACTGGAAGCAAAGAGCCGAGATTGCTAAAAATGATAACCTAAAAGCCTATTTCCCTGATCCCTATGAAGTCTCTGGAAACTTCACCTCTGCCATTAGTGAGTACGTAATTGTTCTCATCATCAATGTTATCTTTAAAGGTAGAATAAGAGGAGCTGCATGCATGGCGACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACCATTGGAGGAAAAGGAGGAAAATTCTACGTCGTCAACGACTCTTCAGATGGTGACTTGCTGTCTCCGAAACCAGGTACTATCCGGCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGAAGCATGGTGATCAAGCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGGGGATTCGATGTCCAAATTGCAAATGGTGCTGGCATCACCGTGCAGTTCATCAAGAACGTCATTATCCATGGCATCAAGGTCTACAACACGGTGGTCAAGACAGGTGGCATGATTAGGGACTCCGAAACTCATTACGGATTTCGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGCGCAAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCGAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGGGCCAGACATGGTTTTGTCCATGTTGTCAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCATCATCAGTGAGGGTAACAGGTTCATTGCCCCTGAAAACCGCTTTGCCAAAGAGATAACCAAGAGAGAATACGCAGAAGAAAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAATACTTGAATGGAGCATTCTTCGTTCAATCCGGGGCTGAATTGAAGAACAGACCATTCTCAAGGGAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCGGGTGTTCTTCCATGCAAAATTGGCCAACCATGCTAG 1344 0.4598 MALKNEILLLYFVCLALTCIDANILENDKYWTNHEQEFDGYWKQRAEIAKNDNLKAYFPDPYEVSGNFTSAISEYVIVLIINVIFKGRIRGAACMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGKFYVVNDSSDGDLLSPKPGTIRHAVTRTEPLWIIFSRSMVIKLQQELIMASNKTIDGRGFDVQIANGAGITVQFIKNVIIHGIKVYNTVVKTGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPENRFAKEITKREYAEESIWKNWQWRSINDEYLNGAFFVQSGAELKNRPFSREDMITAKPGTYVGRLTRFAGVLPCKIGQPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05077 447 PANTHER PECTATE LYASE 18-RELATED 51 445 IPR045032 GO:0030570
Arst3g05077 447 Pfam Pectate lyase, N terminus 37 74 IPR007524 GO:0030570
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Arst3g05077 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Arst3g05077 447 Pfam Pectate lyase 180 363 IPR002022 -
Arst3g05077 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Arst3g05077 447 Gene3D - 97 440 IPR012334 -
Arst3g05077 447 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05077 Arst-Chr3 126151550 126152966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05077 38 447 Polysaccharide Lyase AT1G14420 59.624 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05077 K01728 - gmx:100798579 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03657 4 115361908 115363626 Arst3g05077 3 126151550 126152966 ECH
Arst3g05077 3 126151550 126152966 Arst3g05077 3 126151550 126152966 ECH