Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g05061 | ATGGGGATGAAGAAGAGCGAAAAAGGCAGCAAGAAAGTGATGGAAAATAAGAAGAATGAGAAGAAAGATGTTGGCAGTGCTGCCAGCAATGCAACGATGGAAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTCGCCCTTCCTTATGCGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTATTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTTGCATACAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGGTATGGCTTGCATCTATTGATCATTGATCCTTCAGAGTTTGATGAAGACGAAGTCAAGTATTCCAGTAAAATACCAATAGCTGTAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCACTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCTAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACATAACAAACAAGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGCGTTGAAACAACAACCATCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAAAAAAATGGGCTATCGAAAAAGAGAAAAGTTGCCAGAGTGACTTAG | 1614 | 0.4133 | MGMKKSEKGSKKVMENKKNEKKDVGSAASNATMENDSVFASCSFSSLGLRPSLCDELREKLGFEVPTLVQAQAIPIILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTCIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADRYGLHLLIIDPSEFDEDEVKYSSKIPIAVDYKIPTQLIQRYVKVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGHNKQVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKNGLSKKRKVARVT | 537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g05061 | 537 | MobiDBLite | consensus disorder prediction | 513 | 537 | - | - | |
| Arst3g05061 | 537 | CDD | SF2_C_DEAD | 240 | 390 | - | - | |
| Arst3g05061 | 537 | SMART | helicmild6 | 299 | 381 | IPR001650 | - | |
| Arst3g05061 | 537 | Pfam | Helicase conserved C-terminal domain | 258 | 381 | IPR001650 | - | |
| Arst3g05061 | 537 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Arst3g05061 | 537 | Pfam | DEAD/DEAH box helicase | 68 | 205 | IPR011545 | GO:0003676|GO:0005524 | |
| Arst3g05061 | 537 | Gene3D | - | 2 | 220 | IPR027417 | - | |
| Arst3g05061 | 537 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Arst3g05061 | 537 | SMART | ultradead3 | 62 | 243 | IPR014001 | - | |
| Arst3g05061 | 537 | Gene3D | - | 249 | 534 | IPR027417 | - | |
| Arst3g05061 | 537 | PANTHER | RNA HELICASE | 17 | 509 | - | - | |
| Arst3g05061 | 537 | MobiDBLite | consensus disorder prediction | 509 | 537 | - | - | |
| Arst3g05061 | 537 | Pfam | Domain of unknown function (DUF4217) | 445 | 505 | IPR025313 | - | |
| Arst3g05061 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 74 | 234 | IPR014001 | - | |
| Arst3g05061 | 537 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 42 | 71 | IPR014014 | GO:0003724 | |
| Arst3g05061 | 537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 117 | 402 | IPR027417 | - | |
| Arst3g05061 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 259 | 428 | IPR001650 | - | |
| Arst3g05061 | 537 | SMART | DUF4217_3 | 443 | 508 | IPR025313 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g05061 | Arst-Chr3 | 125971074 | 125979939 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g05061 | 35 | 413 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 26.108 | 8.11e-33 | 128 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g05061 | K14806 | - | gmx:100805157 | 532.717 |