Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05022 ATGGTGATCTGTTTGCAATTCGGGTCTGGAAATGTTGCTCGTGGTTGTTACTTGGATGCTTACATGAGATCTCAGATCAAAAGACCAATGGTATCTTCTAAAGGAGAACGCTCGGGGCAACCCCACGCTGCGATTGATAATGCTGTTCAGAAACTGACCCATGATGATGCCGTAAAATACCTGAAGACCGTGAAGGATGCGTTTCATGATAAGCCGAAAAAGTATGCTGACTTTTTAAAAGTAATGAAAGATTTCAAGGCTCAAAGAACTGATACAGATGGTGTCGTAGCAAGAGTGAAGAAGCTATTTAAAGGGCATAGAAATCTAATTGTAGGGTTTAACGCCTTCTTGCCTAAGAAACATGAAATTGCACTTCCATTGGAGGATGAACAACCTCAGCGGAATAAGCCTGTTGATTTTGTTGAAGCTGTAAATTTTGTGGGCAAGGTCAAGAGCCGGTTTCAAGGCGATGACAGTGTCTATAAGTCGTTTCTTGATATATTGGAGATGTACAGAAAGAAAACCAAGACTATGTCTGAGGTTCACTTAGAGGTTGCTGCACTTTTCCATGGCCATGAAGATCTTCTTGAGGAGTTTACTCGTTTTCTTCCTGATAAGAGCTATGCAATACCAGCTGTTGTACCAATGGATGTTGAAAAGAAAGAAAGTACCATGGCTTCTAATGAGGACCCTGGTGTTGAACCATTCCATGATGAACATGAAAAGTTTGACCTGTGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGTAGTCAAGTCGGTGCTTTCCTTGAAAAAGTCGAGGAGAAATCTCGAACTCCTGAGGTTTACCAGGAATTTTTGAAGTGTCTACTTTTCTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATCGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGATGGATTTAATGATTTTTTGGTACAATGCGAGAAGAATGAAGGATTTTTTGCTGGCGTCATGAATAAAAAGTCCTTGCAGAATGAAGGACATGGATTGAAAGCATTGAAGGCAGAGGACATGGATATAGATCAAGGGGTGGAAAAAGAAATGGATGGAGAGTTACCAATTACTGCCTCATGCATCGAAACACTATTTGAAAAAATAGTCATAGGATGCAAAAGCATAATAAAAAAAGAATGA 1194 0.4012 MVICLQFGSGNVARGCYLDAYMRSQIKRPMVSSKGERSGQPHAAIDNAVQKLTHDDAVKYLKTVKDAFHDKPKKYADFLKVMKDFKAQRTDTDGVVARVKKLFKGHRNLIVGFNAFLPKKHEIALPLEDEQPQRNKPVDFVEAVNFVGKVKSRFQGDDSVYKSFLDILEMYRKKTKTMSEVHLEVAALFHGHEDLLEEFTRFLPDKSYAIPAVVPMDVEKKESTMASNEDPGVEPFHDEHEKFDLCPMSSTCEDKSSLKSMCSQVGAFLEKVEEKSRTPEVYQEFLKCLLFYSREIITRQELQSSVGDLLGKFPDLMDGFNDFLVQCEKNEGFFAGVMNKKSLQNEGHGLKALKAEDMDIDQGVEKEMDGELPITASCIETLFEKIVIGCKSIIKKE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05022 397 ProSiteProfiles PAH domain profile. 50 120 IPR003822 GO:0006355
Arst3g05022 397 PANTHER SIN3B-RELATED 51 332 IPR039774 GO:0003714
Arst3g05022 397 FunFam Paired amphipathic helix protein SIN3 255 329 - -
Arst3g05022 397 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Arst3g05022 397 ProSiteProfiles PAH domain profile. 258 327 IPR003822 GO:0006355
Arst3g05022 397 Gene3D Paired amphipathic helix 56 118 IPR036600 GO:0006355
Arst3g05022 397 FunFam Paired amphipathic helix protein Sin3 56 118 - -
Arst3g05022 397 Pfam Paired amphipathic helix repeat 74 117 IPR003822 GO:0006355
Arst3g05022 397 Pfam Paired amphipathic helix repeat 160 203 IPR003822 GO:0006355
Arst3g05022 397 Pfam Paired amphipathic helix repeat 280 324 IPR003822 GO:0006355
Arst3g05022 397 SUPERFAMILY PAH2 domain 50 119 IPR036600 GO:0006355
Arst3g05022 397 SUPERFAMILY PAH2 domain 263 327 IPR036600 GO:0006355
Arst3g05022 397 SUPERFAMILY PAH2 domain 133 205 IPR036600 GO:0006355
Arst3g05022 397 FunFam Paired amphipathic helix SIN3-like protein 135 206 - -
Arst3g05022 397 Gene3D Paired amphipathic helix 257 329 IPR036600 GO:0006355
Arst3g05022 397 Gene3D Paired amphipathic helix 134 207 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05022 Arst-Chr3 125693993 125697496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05022 3 144 WRKY Transcription Factor Family AT4G12020 36.667 9.74e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst3g05022 PAH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05022 K11644 - gmx:100781798 388.267