Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04998 ATGATTCTAACACGTTCCGCTTTGAATTTGATGCTCCATCTCCACAATCCTCAAACTCCCTTCCAATTCTTCAACCACCATGCTTCCACTTTTCTTCTCCGCACCACCACCACTTCTCTCCTCAAAGCTCGCTTCTTTTCTTCAACCCCTGTAGCAGCAACAGCAGCGTCATCATCTGCGCAAAGTTCAGAGGGTAGAGACACTTTCTTTGCTGAGGATAACGTTTCGTGGAGCTCACTTGGTCTCTCTGATACCCTTTCTCGTGCTCTCTCTAACATTGGCCTCAGTAGACCCTCTCTCGTTCAGGCTTCTTCAATACCATCTGTGCTTTCTGGAAAGGATGTGATTATTGCAGCAGAGACCGGCAGTGGTAAAACATACAGTTATCTAGTTCCTCTATTTGATAAGCTAAGGGACACCCATGAACATTCTCAACACAATGTATCTGATCAAGAAGTTCCTCTGCCCCAAAAGAATGTTTTCCTCGTTCTTTGTCCAAATGTACAGCTTTGCGAGCAGGTAGTCAGGATGGCTAATAGTCTATGTGGAGACAATGGTGAACCAATTGTTAGCGTGGCAGCAATTTGTGGCAGACAGGGATGGCCAATTCGTGAGCCTGATATAATTGTGACAACACCTGCTGCCCTTCTGAATTATGTAGACACTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTCTTCGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGCTAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCCCGTGCAAAAGAATCAACAGGAGATTTACCAGAGAAACCAGAATCTTCCTTGTCAGCAGATGATGCTTTGGAAGATGAAGAGGAACATCCTCCCGAGGCCATGTCAGAAGAGGATGATGATACTCATGAGGATATTGTTGATACTAATAATGAAGCTAAATCTGTTAAACAAAAAGACTGGAGGAGGGTCAGGAAAACTTATAAGCGCAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCTGTTAATGGAAAGAAAACAGCTGGAGCAATGTTGAAACATATGTTTCCTGATGCTACGTGGGTTAGCGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAAAGATGGGTTGAAGTTACGGTCGAGTCGCAGGTTGATCAACTCATAAAGGCTGTGCGTCATCCCTTCAAGCCAACAGATCTGGATAATGCTGGTGGCATCCAGAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGCTCCGATGTGGGATTGAGTGTTTACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCGCAGGCCTTGGTTGAATTTGAAGAGAAAGGTGGTGTTCTTGTATGTACCGATGCAGCTGCTCGTGGTGTGGATATTCCTAATGTATTACATGTTATTCAGGCAGATTTTGCTACTTCTGCCGTGGACTTTCTGCACAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTCGGACTCGTTACTAGCATGTATACTGAATCCAACAAGGAGCTTGTTCGTGCCGTTCGTCGAGCTGGAGAACTTGCTCAACCTGTGTTAATGCTGGTCATGTATGACAATAAGAACCAATGA 1662 0.4465 MILTRSALNLMLHLHNPQTPFQFFNHHASTFLLRTTTTSLLKARFFSSTPVAATAASSSAQSSEGRDTFFAEDNVSWSSLGLSDTLSRALSNIGLSRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLFDKLRDTHEHSQHNVSDQEVPLPQKNVFLVLCPNVQLCEQVVRMANSLCGDNGEPIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDTDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLLNLLRFDEKLLSRAKESTGDLPEKPESSLSADDALEDEEEHPPEAMSEEDDDTHEDIVDTNNEAKSVKQKDWRRVRKTYKRSKQYIFVAATLPVNGKKTAGAMLKHMFPDATWVSGNYLHCHNPRLEQRWVEVTVESQVDQLIKAVRHPFKPTDLDNAGGIQRTMVFANTVEAVEAVAKILLRCGIECLRYHKNCTLEERAQALVEFEEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNKELVRAVRRAGELAQPVLMLVMYDNKNQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04998 553 CDD DEADc 86 268 - -
Arst3g04998 553 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Arst3g04998 553 Gene3D - 371 541 IPR027417 -
Arst3g04998 553 Pfam DEAD/DEAH box helicase 101 265 IPR011545 GO:0003676|GO:0005524
Arst3g04998 553 CDD SF2_C_DEAD 383 521 - -
Arst3g04998 553 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 76 536 - -
Arst3g04998 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 553 IPR001650 -
Arst3g04998 553 MobiDBLite consensus disorder prediction 272 288 - -
Arst3g04998 553 Gene3D - 47 365 IPR027417 -
Arst3g04998 553 Pfam Helicase conserved C-terminal domain 419 512 IPR001650 -
Arst3g04998 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 367 IPR014001 -
Arst3g04998 553 MobiDBLite consensus disorder prediction 272 328 - -
Arst3g04998 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 524 IPR027417 -
Arst3g04998 553 SMART helicmild6 432 512 IPR001650 -
Arst3g04998 553 SMART ultradead3 94 386 IPR014001 -
Arst3g04998 553 MobiDBLite consensus disorder prediction 289 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04998 Arst-Chr3 125562872 125567005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04998 326 538 Eukaryotic Initiation Factors Gene Family AT5G11200 27.869 5.48e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04998 - - gmx:100789323 796.578