Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04852 ATGGACTTCGAGGAAGACTTCACCATCCCCCCACCACCGAGTTACGCTGACTCAGTTCCCAACCCTTCGCGTGTCAAAATGCCCACTAACCCACCGCCACCACCAGCCATGCCGCGAAACAGCGGAAAGGGGAGGTACATGGAGTGTCTCAAGAACCACGCGCTCGCCCTCGGAGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGCCCGCTGGAGCTGACGGCACCCTCGACGCACTAAACTGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGTCGCCGGAGATGCTTTCTTGCTACCTCACCACCACTACAACCCTTTCCATAACCACCGCCACCACCAAGCGTTTCCGCAATTCGCGGCGTGTTACCGCGCTCAGGGAGCTGGATACCTCCACGTGTCAGGACATCAAAGAGGAGGCAGTACCCCGACTCTGGCTCTTCCGTCGATCTCCGGCGGCGGCGGTGGTACCACACAGAGTACGAGGGACGATCACGAGGATGGTTCGGAACCTAGTGGCGGCGGCGGCGGTGTAGGTTCGGCGTCGAAGAAGAGGTTCAGAACGAAGTTCAGTCCGGAGCAGAAGGAAAAGATGACGGTGTTTGCGGAGAGCGTAGGGTGGAAGCTTCAGAAGCTTGACGAGGTGGCGGTTCAGGAGTTCTGCGATGAGGTTGGAGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACCACAAGAACACCCTCGCTATCAAGAAGCCCTAG 759 0.5903 MDFEEDFTIPPPPSYADSVPNPSRVKMPTNPPPPPAMPRNSGKGRYMECLKNHALALGGHALDGCGEFMPAGADGTLDALNCAACNCHRNFHRKETVAGDAFLLPHHHYNPFHNHRHHQAFPQFAACYRAQGAGYLHVSGHQRGGSTPTLALPSISGGGGGTTQSTRDDHEDGSEPSGGGGGVGSASKKRFRTKFSPEQKEKMTVFAESVGWKLQKLDEVAVQEFCDEVGVKRHVLKVWMHNHKNTLAIKKP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04852 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 247 - -
Arst3g04852 252 Gene3D - 173 249 - -
Arst3g04852 252 MobiDBLite consensus disorder prediction 25 39 - -
Arst3g04852 252 NCBIfam homeobox domain, ZF-HD class 188 245 IPR006455 -
Arst3g04852 252 MobiDBLite consensus disorder prediction 142 164 - -
Arst3g04852 252 FunFam Zinc-finger homeodomain protein 2 181 249 - -
Arst3g04852 252 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Arst3g04852 252 MobiDBLite consensus disorder prediction 139 196 - -
Arst3g04852 252 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Arst3g04852 252 SUPERFAMILY Homeodomain-like 175 246 IPR009057 -
Arst3g04852 252 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Arst3g04852 252 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04852 Arst-Chr3 124262921 124264045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04852 42 247 ZF-HD Transcription Factor Family AT4G24660 49.038 1.78e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst3g04852 ZF-HD_dimer 5.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04852 - - lja:Lj0g3v0229739.1 258.07