Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04817 ATGATGCCACCTGGTGATACACCTTCGAAGGCTACTGCAACAACAAAAACATGCTCATCACCTAATACAAAAGATCATGAGAATTCCGACCAGCAAGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCAGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTTACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGCGGAGCCCTGCGCAACGTCCCCATAGGCGGTGGATGCCGCAAAAGCAAGAAAGGGAAGCCCTCGTCGTCCTCCTCCATCTCTTACTCAAGGGCATTTTCATGCGACTCCTCCAGGGACTCTGGTTCTTCCTCTGACCTCGCTGGCCTTAGGTACCTCCATGGGCTTTCTTCTCCTCCCATGGATTTTCAACTTGGAGGGTTAACTTTCCCTGTCCCTTCTAGGCTGCAACATCATCATCAACCTCCAATGGCTACTACAGCTGCTTTCTATAACAACCAGTTCTCTTCTTTTGGGGATGTTGTTCCGGGAGCTACTACTACTGCTTCTGCTTCTGCTTCTGCTTCTTCCGCCATTGATTATCCCTCGGGGAGTTCTTTGATTGGTCTGAACTATCCGTTTTGTTCTTCAGATGGAAGCGGTAGTAATGGTGCAATAATCCATGGCGGTGTGAACAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTCGTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTCTTTGTGGGAGACAACCACCAGAAAGAAGATCACAACAACAGCAACCGCAACGGCAACGTTTCTTTTTCTCCCGTGGTTGTTGATCTTGATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGAGACCCCAACCAATTTTATTTGAGAATCTTGAAATTTCAAAGGCAGGTGCAGGTGCTACTACTGTAGATGCAGATACTAGAGCCACAGAATGGTTCTTCGGGAATTCTCATGCTCCTACTCCAACGACGACTACCAGCAGCGGTTGCAATGGCCATGAAGATAGCTGGATGATGGGCAGCAGCGGTGTCCATGGTTGGCCTGATTTGCAACCGCACCCGCAGCAACAGTACAGTTCTTTGCCCTAG 1191 0.4945 MMPPGDTPSKATATTKTCSSPNTKDHENSDQQGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGKPSSSSSISYSRAFSCDSSRDSGSSSDLAGLRYLHGLSSPPMDFQLGGLTFPVPSRLQHHHQPPMATTAAFYNNQFSSFGDVVPGATTTASASASASSAIDYPSGSSLIGLNYPFCSSDGSGSNGAIIHGGVNNNFEGSSSLASSIESLSSLNQDLHWKLQQQRLAMLFVGDNHQKEDHNNSNRNGNVSFSPVVVDLDHHHHQQQQQQQQRPQPILFENLEISKAGAGATTVDADTRATEWFFGNSHAPTPTTTTSSGCNGHEDSWMMGSSGVHGWPDLQPHPQQQYSSLP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04817 396 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Arst3g04817 396 MobiDBLite consensus disorder prediction 95 127 - -
Arst3g04817 396 MobiDBLite consensus disorder prediction 8 36 - -
Arst3g04817 396 MobiDBLite consensus disorder prediction 1 42 - -
Arst3g04817 396 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
Arst3g04817 396 MobiDBLite consensus disorder prediction 104 127 - -
Arst3g04817 396 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 303 IPR045174 GO:0003700|GO:0006355
Arst3g04817 396 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Arst3g04817 396 MobiDBLite consensus disorder prediction 348 369 - -
Arst3g04817 396 MobiDBLite consensus disorder prediction 348 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04817 Arst-Chr3 123836229 123837916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04817 40 396 C2C2-Dof Transcription Factor Family AT5G65590 38.781 1.10e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Arst3g04817 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04817 - - ahf:112791714 662.144