Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04796 ATGGCTCCGCCCCTGCTGGTTACCAAGGAGGAAGGGCTGAGCAACGCTTCAACTGTAGCCTCTGCATCTTCGCCACAATCCTTGGACTGCTTCTCCCAAAATGGAGGGGTTTCCTTGAAAGAACGCAACTACTTGGGTTTGTCCGATTGCTCATCAGTAGACAGTTCAGCTGCGCCTGGCATGTCTGATGAGAAAAAGGACAATCTGAATTTGAAGGCCACCGAGTTGAGGCTCGGCCTTCCTGGATCCCAATCTCCTGAAAGGGGTCCAGACATCTTCTCATTGAGCTCAACAAAGCTTGATGAGAAACCACTGTTCCCGTTGCTCCCGCTCCCTACGAAAGATCCGTGCTCATCAACTCAAAAGACTGTAGTTTCGGGAAACAAAAGGGGGTTTGCTGATGCAATGGATGGATTCCCCGAGGGAAAGTTTACTGGTACTGCTGCAATAAATGTGATGCTATCACCAAGACCTGCTGGACTGCAACCAACTGCAAAGAAGGAAATACAAAGCAAGGTATTACAAGGAGAGACCGGCGCAGTCAGTGGAACAGGAGGTGCTGTCGGCGGCAGTTCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCGTTGGCTACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGCCCGGCGGTGCTCTTCGTGAAGGTGAGCATGGATGGTGCTCCATATCTGAGGAAGGTTGATCTGAGGAATTATACGACATACCAGGAATTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTATCTTAGGTCAGTGTGGTTCGCATGGGGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAAGGATCTCCTGCATGGTTCAGAATATGTACTTACTTATGAAGACAAAGATGGCGACTGGATGCTCGTAGGAGATGTGCCTTGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTGTGGAAAAATCCAGGAGCAGGAGCTAG 1056 0.4896 MAPPLLVTKEEGLSNASTVASASSPQSLDCFSQNGGVSLKERNYLGLSDCSSVDSSAAPGMSDEKKDNLNLKATELRLGLPGSQSPERGPDIFSLSSTKLDEKPLFPLLPLPTKDPCSSTQKTVVSGNKRGFADAMDGFPEGKFTGTAAINVMLSPRPAGLQPTAKKEIQSKVLQGETGAVSGTGGAVGGSSPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSPAVLFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFILGQCGSHGAPGREMMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAVEKSRSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04796 351 Gene3D - 228 345 - -
Arst3g04796 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Arst3g04796 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 338 IPR003311 GO:0005634|GO:0006355
Arst3g04796 351 MobiDBLite consensus disorder prediction 11 32 - -
Arst3g04796 351 MobiDBLite consensus disorder prediction 1 32 - -
Arst3g04796 351 Pfam AUX/IAA family 74 342 IPR033389 -
Arst3g04796 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Arst3g04796 351 FunFam Auxin-responsive protein 226 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04796 Arst-Chr3 123646326 123650820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04796 245 331 B3 DNA Binding Superfamily AT1G19220 32.184 4.52e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst3g04796 AUX_IAA 3.9e-89 CL0072