LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g04764	ATGGGGATGAGTGGGGATGGAGACGAAGTAATAATAATTTTGCGACCATCATTATTTATCATCGTCACGATTCTCAAGTTGGCAACCCTAAACCTTCAAACTAGACACGAAAGGAAGCAAATGCAAATCTCACTATCTACTATACTCGCCATCTTCTCCATCACACTAGTAATTCTCACTTCACCATCCACCTCTCTCTACTATTCTCCTTCACCTCCGGCGGCGCCGTTTAACTCTTCTTCCCATTCTTCTCAGTCTTCTCCTCCTTATGCTGAATGGCTGTCCGCACACGCCACCTACTACACCCCCGCCAATTCCACCGACGCGCTTGGAGGCGCCTGCGGCTACTCTGACGGCACTGGTGCGGCGGCCGCGGCGATCCTCAGCCACGCGGTGTTTGAGCAGGGACAGATCTGTGGTGCGTGCTTCGAGCTGCGGTGTGCCGAGGAGGATTCTCCGTTCGACCGTCGGTGGTGCATCCCCGGAAGGTCGGTGATGGTAACGGCGACGGACTTCTGTGCACCTAATTACGGGGTCGACGCCGACGAGGAGAGTGGCGGCGGGAGGTGCAACCCTCCGAAGCAGCACTTCGTGGTCCCCGTTGACACCTTCGAGAAGATCGCGATCTGGAAGCAAGGGAACCTGCCGGTTCAGTATCGGAGGATAAAGTGCAGAAGGGAAGGAGGAATCCGATTCACGATCACTGGTTCTGGGATCTTCATTTCTGTGCTGATCAGCAATGTGGCTGGGACAGGAGACATTGTTGCCGTGAAGGTTAAGGGTTCAAGAACTGGCTGGCTTCCTATGGGGAGGAACTGGGGCCAAAACTGGCATGTAAGCGCCTTACTACAGAACCAACCTCTTTCTTTCGAGGTTACTTCCAGTGATGGTGTCACACTTACATCTTACAATGTTGCTCCCAAACATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAA	972	0.5278	MGMSGDGDEVIIILRPSLFIIVTILKLATLNLQTRHERKQMQISLSTILAIFSITLVILTSPSTSLYYSPSPPAAPFNSSSHSSQSSPPYAEWLSAHATYYTPANSTDALGGACGYSDGTGAAAAAILSHAVFEQGQICGACFELRCAEEDSPFDRRWCIPGRSVMVTATDFCAPNYGVDADEESGGGRCNPPKQHFVVPVDTFEKIAIWKQGNLPVQYRRIKCRREGGIRFTITGSGIFISVLISNVAGTGDIVAVKVKGSRTGWLPMGRNWGQNWHVSALLQNQPLSFEVTSSDGVTLTSYNVAPKHWTFGQTFEGKQFES	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g04764	323	Pfam	Lytic transglycolase	127	219	IPR009009	-
	Arst3g04764	323	SUPERFAMILY	Barwin-like endoglucanases	90	247	IPR036908	-
	Arst3g04764	323	SMART	dpbb_1	125	219	IPR007112	-
	Arst3g04764	323	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	239	318	IPR007117	-
	Arst3g04764	323	Gene3D	-	230	321	IPR036749	-
	Arst3g04764	323	CDD	DPBB_EXPA_N	92	224	-	-
	Arst3g04764	323	Pfam	Expansin C-terminal domain	230	307	IPR007117	-
	Arst3g04764	323	Gene3D	-	76	225	IPR036908	-
	Arst3g04764	323	PRINTS	Expansin signature	275	296	IPR002963	GO:0009664
	Arst3g04764	323	PRINTS	Expansin signature	304	320	IPR002963	GO:0009664
	Arst3g04764	323	PRINTS	Expansin signature	115	129	IPR002963	GO:0009664
	Arst3g04764	323	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	111	229	IPR007112	-
	Arst3g04764	323	PRINTS	Expansin/Lol pI family signature	110	128	IPR007118	GO:0005576
	Arst3g04764	323	PRINTS	Expansin/Lol pI family signature	304	318	IPR007118	GO:0005576
	Arst3g04764	323	PRINTS	Expansin/Lol pI family signature	212	228	IPR007118	GO:0005576
	Arst3g04764	323	PRINTS	Expansin/Lol pI family signature	266	280	IPR007118	GO:0005576
	Arst3g04764	323	PRINTS	Expansin/Lol pI family signature	92	107	IPR007118	GO:0005576
	Arst3g04764	323	PANTHER	EXPANSIN-A15	60	321	IPR002963	GO:0009664
	Arst3g04764	323	SUPERFAMILY	PHL pollen allergen	226	318	IPR036749	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g04764	Arst-Chr3	123292338	123295412	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g04764	92	323	Expansin Gene Family	AT3G03220	68.220	7.35e-119	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g04764	-		-	adu:107481013	610.527