Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04762 ATGAAACTAACTGCAACAACAACAACAACCATGACAATGGAAGAAGACTCCTTAGCTGCACTTCCATTTGACAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGCAGAGGAAAACCAAAGCTCTGCCCTTTCAGACTTTCCCCGGATGAGAGGAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTTCGGTTTCGAAGATTATTCAAGGGCAGGGAAATATAAGGTGCCAAAGGCAAAATGAAGCTGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTGACAGCGAACACTCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTACTACTTGGTTTGTTGGATTGAGAGCTGTGATTTCTCGGTGCCAGCATCCTCGACCTTTCAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTCAGTAGTCCGGCCGGAATATTACGAAGAAAGAAAAATCTTGGCCTCCTGGATGATACCTCCCAATTTGCTCAGGTACATAGTGTATGCGCAAGTCCCACTTTGTCACTCTCAGAAAGGTGTTTTTCTGATGGCTTATCATATACATCTGACAAGTTTTATCCATCAACACCTTTCCTTTCCAGTGCAAATGACATGATTGATAATTCTGTCCCAAGTTCTCCATATATTGATCCAGATACTCCTATTAAGATTGAAACAACACGTCTCAACAAGGAGCACAAGAATTTGTCCTGCAGGTCTATGTTGAACCCCGCCACACCACTCATAAGAAACAACAATGCATTGAAGGATGTAATGGTTTGGGGTGGAGGGATTGGAGGTCTTGTAGGGATTGTAAATGAAAGGTTTGTGAACCAACATGGAATATATTCTTTAGTTCCAAAGTTGCTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTGGTAACAAAAGAAGGGGAAGTGTTTTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATAGACACTAGCTCCCCGAAAATAGTTGATTCTCTTAATGGTGTTCATATAAAACAGGTAACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGAATGATGTTTGTTGTTCGGATTTGGTTAATGAAGGCCGGATAAAAAATCAATGGATACCACATAAACTTTCAGGTCCTCTAGATGGTATTAGCATTTCAAGCATTGCTTGTGGAGAATGGCACACTGCCATTGTCTCTAGCTGTGGAAAATTATTTACATATGGAGATGGTACCTTCGGAGTTCTTGGCCATGGCAATCTTCAGAGCTGTTCTCGACCGAAACATGTTGAGTCTCTTAGTGGTCTAAAGGTGAGGTCTGTTGCTTGTGGTTCATGGCATACAGCTGCAATTGTGGAAGTCATGGTTGATCACTTTCGGTATAATACTCCTACAGGCAAGCTGTTTACTTGGGGAGATGCAGATGAAGGGAGGCTTGGTCATGCAGATAATGGAAACAAGCTTGTTCCGACTTGTGTTTCGCAACTCGTTGACTATGATTTTGTTCAAGTAAGTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGGAAGGTATTTGCAATGGGAAGCGCGAGATATGGACAGCTCGGAAATCCTCACGCCAGAGATAGAGCAGTAATGGTTGAAGGACAGCTTAAACAAGAGTTTGTTAAAGTGATTTCGGCTGGTTCATATCATGTTGCTGTTTTGACTTCGGCCGGGAGTGTCTATACATGGGGCAAAGGTGAAAATGGTCAACTTGGACTAGGTGATGCCGAAGACAGGTACACGCCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAAGTAGAAACAATAACTTGTGGATCAAGTTTCACGGCTGCAATCTGTTTGCACAGACCGATTTCTATTAGTGACCAGTCAGCTTGTAGTGGGTGTAGGCTGCCGTTTGGATTCACAAGGAAGAAGCATAACTGTTATGATTGTGGCCTTCATTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCTTCTCTAGCCCCGAGTAAGAGCAAGGCCTTTCGAGTTTGTGATCAGTGCTATGATAGAAGGCAAGGAAGTACACATTCAGCAGTGGCTTTGAAGTCTAGAAATTGCAACTCCCAGCAGCTGCACAGACTTCCTGATCTGACTGAAGATAGAGGAGAGACAACTATGGCACAGGGTCCTCTCTTGACGCTCGGCCAATCATGTTATAGGAAAAGCATGCCCAGTGGAAGAAAGGACTGGAAAAACCAACAAGAGAGCCAGCAGCATTTAGAAGATAGTTCTTCTTCTATGTTAGGTGGGATGCCCCAATGGGGGCAAGTTCCATGCCCTGCCCAATTTAGAATCAATTGTAAAGAAAATTTGGCTGGGCATGTTTCTTCGTCGAAAAATAAAGTAGCTACTGTTGCCCCACCAAATATAGAATCTCCGGCGGCAGCATTCAACTTCTCTAGTGCAGAGTCAGATACAACAAAGTCTGATAAGATGCTCATTGAAGAAGTTCAGAGGCTGAGAGCTGAGTTAAAGAGACTTGAAGAACAGTGTGAACTCAAAAACCATAAGATACAAGAGTGCCAACAGAAAATTGAGGAGAGTTGGTTTGTAGCAAAGGAGGAAGCTGCTAAGTCCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCTTTAAGGCTTCATACAATATCAGGAAAAGAGAATGCTGGACAAGAAGGAAAAGTTGGGATACATGATTGCATGTCTAATTTGGCACCCATACATATAGATATGAATAGTCCTAGGGATGGCAACATGGACAGTCTATCTAATTCCCCTATAGTATTCTCAGACACATTGAAATCAAAACTTGGGAGAAACATGTTACTCAAGAATGATAGAGTGACGGAAAATTCTAGCATCGCTAAACCACAGTCACAGCAAGACAATACTGACAGCATGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGGAAAAAGGGCCTTAAAAGGGTCAGATTCAGCCGGAAACGATTCTCGGAGAAGGAAGCAGAACGGTGGTGGGAAGAGAATCAATGCAGAGTGTACCATAAATATGAGATTGAAGGGTGTATAAACAATAGCCAAAGTCAGGTGAAAGGCTAA 3252 0.4259 MKLTATTTTTMTMEEDSLAALPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSSVSKIIQGQGNIRCQRQNEAEKECHSFSLIYADSEHSLDLICKDKAQATTWFVGLRAVISRCQHPRPFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFAQVHSVCASPTLSLSERCFSDGLSYTSDKFYPSTPFLSSANDMIDNSVPSSPYIDPDTPIKIETTRLNKEHKNLSCRSMLNPATPLIRNNNALKDVMVWGGGIGGLVGIVNERFVNQHGIYSLVPKLLESTMMLDVQNIALGGKHAALVTKEGEVFCWGQGKWGRLGQKIDIDTSSPKIVDSLNGVHIKQVTCGEYHTCALTDSGEVYAWGNDVCCSDLVNEGRIKNQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGKLFTYGDGTFGVLGHGNLQSCSRPKHVESLSGLKVRSVACGSWHTAAIVEVMVDHFRYNTPTGKLFTWGDADEGRLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSARYGQLGNPHARDRAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLGDAEDRYTPSFVEALRDRQVETITCGSSFTAAICLHRPISISDQSACSGCRLPFGFTRKKHNCYDCGLHFCRACSSKKVINASLAPSKSKAFRVCDQCYDRRQGSTHSAVALKSRNCNSQQLHRLPDLTEDRGETTMAQGPLLTLGQSCYRKSMPSGRKDWKNQQESQQHLEDSSSSMLGGMPQWGQVPCPAQFRINCKENLAGHVSSSKNKVATVAPPNIESPAAAFNFSSAESDTTKSDKMLIEEVQRLRAELKRLEEQCELKNHKIQECQQKIEESWFVAKEEAAKSKAAKEVIKALALRLHTISGKENAGQEGKVGIHDCMSNLAPIHIDMNSPRDGNMDSLSNSPIVFSDTLKSKLGRNMLLKNDRVTENSSIAKPQSQQDNTDSMKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAERWWEENQCRVYHKYEIEGCINNSQSQVKG 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04762 1083 Gene3D - 266 396 IPR009091 -
Arst3g04762 1083 Gene3D - 397 493 IPR009091 -
Arst3g04762 1083 MobiDBLite consensus disorder prediction 789 803 - -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 442 456 IPR000408 -
Arst3g04762 1083 PRINTS Chromosome condensation regulator RCC1 signature 275 291 IPR000408 -
Arst3g04762 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 478 488 IPR000408 -
Arst3g04762 1083 Gene3D - 494 663 IPR009091 -
Arst3g04762 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 71 926 - -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 439 IPR000408 -
Arst3g04762 1083 Pfam Transcription factor regulating root and shoot growth via Pin3 1014 1068 IPR013591 -
Arst3g04762 1083 Coils Coil 862 896 - -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Arst3g04762 1083 SUPERFAMILY FYVE/PHD zinc finger 661 732 IPR011011 -
Arst3g04762 1083 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Arst3g04762 1083 CDD FYVE_like_SF 667 720 - -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 605 IPR000408 -
Arst3g04762 1083 SUPERFAMILY RCC1/BLIP-II 274 658 IPR009091 -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 332 IPR000408 -
Arst3g04762 1083 SMART fyve_4 656 725 IPR000306 GO:0046872
Arst3g04762 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 733 IPR013083 -
Arst3g04762 1083 MobiDBLite consensus disorder prediction 774 803 - -
Arst3g04762 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Arst3g04762 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 384 435 IPR000408 -
Arst3g04762 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 503 551 IPR000408 -
Arst3g04762 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 332 381 IPR000408 -
Arst3g04762 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 606 654 IPR000408 -
Arst3g04762 1083 Pfam FYVE zinc finger 664 722 IPR000306 GO:0046872
Arst3g04762 1083 Gene3D - 26 142 IPR011993 -
Arst3g04762 1083 Pfam Pleckstrin homology domain 28 134 IPR001849 -
Arst3g04762 1083 SUPERFAMILY PH domain-like 26 136 - -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Arst3g04762 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Arst3g04762 1083 ProSiteProfiles BRX domain profile. 1014 1069 IPR013591 -
Arst3g04762 1083 CDD PH_PLC_plant-like 25 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04762 Arst-Chr3 123241690 123247748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04762 1010 1071 Major Intrinsic Protein MIP AT1G31880 46.774 7.19e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04762 - - adu:107481014 2191.39