Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04589 ATGGATCTCTCCAAGAAGCGTAAAACGGACCAGAACGGCGACGCTGATTCCTCGCCTTCACAACAACCTCCCCCTTCCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTGCAACCCTTCACGCACGAGCAGCTCATCGACCTCCTCCAGTCAGCGTCCCTCCGCCACCCCGACGTCTTCGACTCTGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCTGCCTACGGCGACCTAGACGAAGCCATCGTCATCTTCGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACTTTCTCCCACGTCGACGGCGCTGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACGCAGCTTGCCGCCTCCGGCGGACCCGGAGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTGTTTGTAGGTAACGTCCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTTTAGGGTTTGATAAGAGTAGCGGTAAAACAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGTGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCTGTGGATAACAAGAAAGCGAAGCCGCAGAATCCTGCTTCTGGTTTCCCAGGGGATGGTATGCATGCTCAGCAGCAACAGCAACAGCAACCTCAACCTTCTTACAATGCTCCTATGCTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGCAACGGATATGGGATGCAGCCTTCGGTGCCGTCGTATGGGAACCCTGTTCCAGCTGCTGCTGGTGGTGTTGGTGGGTATGGGGCTACGGTTGGTGGGGGCGGTTATGGGAATTCGCAGTATGGCGGGCCGGTTTCCGGCGAGTATGGTGCGAGGTTGCCTCCTACGTCCGGTGGAGTACCCTCTGGTGGGTTTATGGATGGCTCCCATTATGGTGGTTTACCTTCGTCTGCAATTCCGTCACAACAGCCGCAGCCTGTTCCGATGCCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTACTGA 1200 0.5742 MDLSKKRKTDQNGDADSSPSQQPPPSTSLSADDIRKILQPFTHEQLIDLLQSASLRHPDVFDSVRSVADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKTRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKAKPQNPASGFPGDGMHAQQQQQQQPQPSYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNPVPAAAGGVGGYGATVGGGGYGNSQYGGPVSGEYGARLPPTSGGVPSGGFMDGSHYGGLPSSAIPSQQPQPVPMPRPAPPGGMYQGVPPYY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04589 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 254 IPR000504 GO:0003723
Arst3g04589 399 SUPERFAMILY RNA-binding domain, RBD 65 155 IPR035979 GO:0003676
Arst3g04589 399 Gene3D - 2 157 IPR012677 -
Arst3g04589 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Arst3g04589 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Arst3g04589 399 MobiDBLite consensus disorder prediction 374 399 - -
Arst3g04589 399 MobiDBLite consensus disorder prediction 14 30 - -
Arst3g04589 399 Gene3D - 158 275 IPR012677 -
Arst3g04589 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Arst3g04589 399 MobiDBLite consensus disorder prediction 248 276 - -
Arst3g04589 399 MobiDBLite consensus disorder prediction 260 276 - -
Arst3g04589 399 SUPERFAMILY RNA-binding domain, RBD 162 260 IPR035979 GO:0003676
Arst3g04589 399 PANTHER GEO13361P1-RELATED 58 300 - -
Arst3g04589 399 FunFam UBP1-associated protein 2C isoform A 58 161 - -
Arst3g04589 399 SMART rrm1_1 167 239 IPR000504 GO:0003723
Arst3g04589 399 SMART rrm1_1 76 148 IPR000504 GO:0003723
Arst3g04589 399 MobiDBLite consensus disorder prediction 1 30 - -
Arst3g04589 399 MobiDBLite consensus disorder prediction 352 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04589 Arst-Chr3 121193918 121196097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04589 162 254 C2H2 Transcription Factor Family AT2G19380 35.789 1.50e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04589 K12741 - gmx:100804230 440.654