Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04553 ATGGCTTCTTCGAACAGACATTGGCCAAGCATGTTCAAATCGAAGCCTTGCAACCAGTTTCAGCATGACATGGTCTCAACTACTACTGCATCTTGCCACAGATCAGCTCCTTATAATCCTATTTCAGGATTAGGATGTGATGAGAAGAGTCCAGAACCGAAGCCAAGATGGAACCCAAAACCAGAACAAATCCGGATTCTGGAGGCGATATTCAATTCTGGAATGGTGAACCCTCCAAGGGATGAGATAAGGAAGATAAGGATGCAGTTACAGGAGTACGGTCAAGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCACCTCACTAATAATAATAGTAGGAATAACAACACTCCATCACCGTCACCACCGCCGCCGCTGCCGCCGCAGCAACAATTCATCTCAGCCACTACCAACTCATCCTCCTCCTCTTCCTCTGACAAATCATCTCCAAAGTTCGTTCCCGCTTTCACCGATGTGGTGATGCTGCTGCCTAATTCTCCAACAGCCTCTGTAAACCAGAACTACTTTCATCACAACGACACCAATAATAACAACACTATCAATCATCTCTTGGTTCCTCCACCACTACCGATCGAACCATTCTTCCCTGTGTTCCATAATAGTAGTGGCGTGGTTGCAACTACTGAGATCTCTAATAGTGTGGGTAATCATCATCAACCTCCTCATCTTGTTTATCAAGAAAACGTTGATCCTTGCACTGATCTGCTCCTTAGCGAAATCATGAGCCATGGAGGAGTAGAACCGTCCTCTAAGAGATACCATGAACAAGACAAGGCAGCGGCCACCGTCAAGATTAGGCAGCCACAACAATACATCAGCTTCTGTCCGGTTTCAACTCCTCCTCCTTCCTTCACTAACACAACCGCTACACCTATTACTGTTCCATCCCCATTTCAAGGTGCAGGTGGTGGTTGTGGTAGTGGTGATGCGTCAGCCGCGAAATGTACGGTGTACATAAATGACATGGCATGCGAAGTCGATGTGGGTCCCTTTAACGTGCGTCACGCTTTTGGTGATGAGGCGGTGCTTATCGATTCCTCCGGCCACACCGTTCTCACCGATGACTGGGGCGTCACCCTCCACCCTCTCCAGCATGGCTTCTCTTACTATCTCATCTGGTTTCTTTCCTTCTTTCTCTCGCCACCATAA 1206 0.4809 MASSNRHWPSMFKSKPCNQFQHDMVSTTTASCHRSAPYNPISGLGCDEKSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLTNNNSRNNNTPSPSPPPPLPPQQQFISATTNSSSSSSSDKSSPKFVPAFTDVVMLLPNSPTASVNQNYFHHNDTNNNNTINHLLVPPPLPIEPFFPVFHNSSGVVATTEISNSVGNHHQPPHLVYQENVDPCTDLLLSEIMSHGGVEPSSKRYHEQDKAAATVKIRQPQQYISFCPVSTPPPSFTNTTATPITVPSPFQGAGGGCGSGDASAAKCTVYINDMACEVDVGPFNVRHAFGDEAVLIDSSGHTVLTDDWGVTLHPLQHGFSYYLIWFLSFFLSPP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04553 401 FunFam WUSCHEL-related homeobox 11 54 121 - -
Arst3g04553 401 MobiDBLite consensus disorder prediction 113 162 - -
Arst3g04553 401 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 392 IPR044557 GO:0003700|GO:0050793
Arst3g04553 401 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Arst3g04553 401 Gene3D - 54 119 - -
Arst3g04553 401 MobiDBLite consensus disorder prediction 143 162 - -
Arst3g04553 401 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Arst3g04553 401 CDD homeodomain 53 115 IPR001356 GO:0003677
Arst3g04553 401 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Arst3g04553 401 MobiDBLite consensus disorder prediction 40 59 - -
Arst3g04553 401 SMART HOX_1 52 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04553 Arst-Chr3 120817406 120819652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04553 1 123 Wox Gene Family AT2G33880 76.190 3.88e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Arst3g04553 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04553 - - pvu:PHAVU_006G179900g 344.354