Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04538 ATGGCGGGTTTGATTGATCTCAACACCACGGAGGACGATGAAACGCCGTCGTATGGTTCCTACGCTGCTTCTCCATCTTCTTCCTCCTCGCACTCGGGAACAAGCACTGCTTCTGTTTCAGCTTCAGCTCCGGTTGTTCCTGGTTCTTCTTCTAACTCCGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGTTCAATGATCTCGTTGCCGAAGAAGGGAACTCTTGTTGTGTACTTCCCACAGGGACACTCTGAGCAGCAACTTCACGATTTTCCTCTCTCTAACAACAATAACAGCATCCCACCCCATGTGTTCTGTCGCGTTCTCGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTTTTGCTTGTTCCTGAAAATGAGCAAAAATTTCAGGAAGGGGATATTGAGGCTGATGGTGAAGAGGAGGACACGGATGCTGTGATGAAGGCAACAACACCCCACATGTTTTGCAAGACTCTGACAGCTTCCGATACCAGCACTCATGGTGGATTCTCGGTTCCCCGTCGTGCAGCTGAAGATTGCTTTCCTCCACTGGATTATAGTCAACAGAGGCCATCACAAGAGCTTGTAGCAAAGGATCTGCATGGCCGGGAATGGAAGTTTCGACATATTTACAGGGGGCAGCCACGAAGGCATTTGCTTACCACCGGATGGAGTGCATTTGTGAACAAGAAGCAGCTGGTGTCTGGAGATGCTGTCCTGTTTCTTAGGGGGGCAGATGGTGAACTGAGATTGGGAATTCGTAGGGCAGGTCAATTGAAAAGTGATGGTAAATTTTCAGCTCTCCCTCACCAGCAGTTGAATCATAGCACTCCTGTGGAAGTGATTAATGCTCTGTCTTCAAGATGTGCCTTCAGTGTTCACTATAACCCAAGGGTTAGTTCATCAGACTTCATCATACCTGTCCACAAATTCTTGAAGAGCCTTGATTATTCATATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGATCGAAGAATCACAGGATTAATTATTGGGATTAATGATGTTGATCCTGTCAGATGGCCCGGATCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACTTAGAAACCACACGGCATAACAGGGTTTCTCCATGGGAGATTGAGCCATCAGGTTCTGCTTCCACTGCCAGTAGCCTGATGACAGCTGGTTTGAAGAGGAGCAAGATTGGATTGCCTTCAGTACAGCTAGAATTTCCAGTTCCCAATGGCATCAGTACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCCTGTCAATGGTATTAATGCTCAGTGTCACCAATTATCGGAACTAAGAAGGTGCTATCCTGGATTTACCACAGCAGGACATGGTACAATCCCACAAGTGAGTTCCGATGCTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAATGGTCGCCTCGGAGCTTTTGATGGTTACCAGATGCTAAGGTCCAGAAATGGATGGTCTGCGCATATGAATAGCAATTCTTCTCATTTGCATGCACCCTTTTCATCTGGTCAACTCTCATCTCCATCATCCGTGTTGATGTTCCAGCAAGCATTTAATCCAGTTTCAAACTCTGATTATAGCAACAAAGCTAATCAGGTGAAGGGTGGTAAAGCACTTCAACGAGGTTCATATGCTTCTGAAGTTGATGGTGGAACGAATGCTTCCTTCCCATCTTATGAGACAACTTTCCATGGGAAAGCTCAGGAAGGAAAAAATTCTTTCACTTTTTTAAATCTGCATGATCAGTTGGGTGGTAGTCCACGTTCACCTGATTCAAGATCAGAGCCGAGAGGAAGTCAAGAGCTGGTTTCTTCATGTAAAAGCAACTGCAGAGTCTTTGGTTTTTCACTAACCGAGGGTGCTCCCGTTGCAAATGAAGAGACTGACCCCTCTACAGTCACTTTTCAATTAAATTCTGGGCCTTCTTTTACAAGACATTGCCAATGA 2100 0.459 MAGLIDLNTTEDDETPSYGSYAASPSSSSSHSGTSTASVSASAPVVPGSSSNSVCLELWHACAGSMISLPKKGTLVVYFPQGHSEQQLHDFPLSNNNNSIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENEQKFQEGDIEADGEEEDTDAVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNKKQLVSGDAVLFLRGADGELRLGIRRAGQLKSDGKFSALPHQQLNHSTPVEVINALSSRCAFSVHYNPRVSSSDFIIPVHKFLKSLDYSYSVGMRFRMRFETEDAADRRITGLIIGINDVDPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPSGSASTASSLMTAGLKRSKIGLPSVQLEFPVPNGISTSDFGESLRFQKVLQGQEILGVNNPVNGINAQCHQLSELRRCYPGFTTAGHGTIPQVSSDASCNGIGFGESFRFQKVLQGQEILPSQPYGNGRLGAFDGYQMLRSRNGWSAHMNSNSSHLHAPFSSGQLSSPSSVLMFQQAFNPVSNSDYSNKANQVKGGKALQRGSYASEVDGGTNASFPSYETTFHGKAQEGKNSFTFLNLHDQLGGSPRSPDSRSEPRGSQELVSSCKSNCRVFGFSLTEGAPVANEETDPSTVTFQLNSGPSFTRHCQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04538 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst3g04538 699 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Arst3g04538 699 MobiDBLite consensus disorder prediction 676 699 - -
Arst3g04538 699 MobiDBLite consensus disorder prediction 673 699 - -
Arst3g04538 699 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Arst3g04538 699 Gene3D - 325 399 - -
Arst3g04538 699 Gene3D - 160 263 IPR015300 -
Arst3g04538 699 SMART B3_2 162 264 IPR003340 GO:0003677
Arst3g04538 699 FunFam Auxin response factor 160 264 - -
Arst3g04538 699 MobiDBLite consensus disorder prediction 10 43 - -
Arst3g04538 699 MobiDBLite consensus disorder prediction 629 652 - -
Arst3g04538 699 FunFam Auxin response factor 325 396 - -
Arst3g04538 699 MobiDBLite consensus disorder prediction 1 43 - -
Arst3g04538 699 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst3g04538 699 CDD B3_DNA 160 262 IPR003340 GO:0003677
Arst3g04538 699 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04538 Arst-Chr3 120684465 120689928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04538 161 513 B3 DNA Binding Superfamily AT2G33860 60.056 7.41e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst3g04538 B3 8.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04538 K14486 - gmx:100808119 974.541