Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04494 ATGCCAGCACAGAAGCGGTTGCATGGGTCTCTGGAGGAGCACGAGGATGCTCTGCGCGCCAACAGCGTCGAGAAGCAAGAATATGAAGTCGAATCCGATCGAAGCAACTCTTTGAGCAACGGCGACAAGGAGGAATATGTGGTTATAAAATTGGCAGATGTACGCAAGGAAGTTCAGTGCCCCATCTGCCTAGGCATCATTCGGAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCTATGCGTCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTCAGGGATGATCCAAATTATGATGCCTTGATTGCTGCTCTCTATCCAGATATTGATAAGTATGAGGAGGAGGAATTGGCATTACACGAAGACGAGGTGACTCACAATAAACAGAAGATTCAAGCTTCCATTGCTCAGACTCTTAGACGACAGACAGAAGCATTGGGTAAGAAACGGAATGCTAAATCAGCAGCAGTGGCTTTCGTAAGGAGGTCACAAGGTAACTATCGAACCTCAAATATGAGGAGAAGAAAACGCTTCAGAAATGCAGGTGAACAAGAAGTATCCGATGACAATGAGGGTGTGAATGATAATGAAGGGGGGAAGGGCTCATCTTCCTGCGATGAGCAGACTGAAAACAGACCAAAAAGATGCAAAAGAGGCGGAGAAACACAGTTTCCTCAGCATTCTGCCTCTACTGACGCGGATGTAGCCGGAGAGGAAAATACTCCTGAAGGGGATAGAGATGTCATAACTTCATCTGGTAGTACACTTGCCTGGGGGAAGAATGGACAGCGGAGTCACACCCGAGGAAATGGCAAGAATTCTGCCAATGGGAAAAATTCCAAAAACAGTCGCATCTCCAAGTTGGTTGATCGTCTTCACAGCTCTGAAGAAAATGATGACAGGTCGGATATCTTTCTTGTGGTTGTCTCTATGGATAAACAAAGAGGACCAAATTTGCAGGAGCCATACCTTCAGTGCAAGCCTACATTGTCAGTCAGTTCACTGAGCAAGTATGTTGCAGTTAAGACTGCACAGCAGCCAGATGATGTTGAGTTATGCTTGGTAGAAGAGCCGGGAGAGCCGCAAGTCAATATTATAAGAGGTGAAAGAACAGTTGATCCAAAAAAAGATAAGGTACGTGCTCTAGGAGAACAAGAAACGTTGGCTGAACTGAAAAGTTGTAACCTCATCCGTGGTTATCTGCTCATGGCTTATAAGAGGAAGTTGTAG 1281 0.4575 MPAQKRLHGSLEEHEDALRANSVEKQEYEVESDRSNSLSNGDKEEYVVIKLADVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELALHEDEVTHNKQKIQASIAQTLRRQTEALGKKRNAKSAAVAFVRRSQGNYRTSNMRRRKRFRNAGEQEVSDDNEGVNDNEGGKGSSSCDEQTENRPKRCKRGGETQFPQHSASTDADVAGEENTPEGDRDVITSSGSTLAWGKNGQRSHTRGNGKNSANGKNSKNSRISKLVDRLHSSEENDDRSDIFLVVVSMDKQRGPNLQEPYLQCKPTLSVSSLSKYVAVKTAQQPDDVELCLVEEPGEPQVNIIRGERTVDPKKDKVRALGEQETLAELKSCNLIRGYLLMAYKRKL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04494 426 MobiDBLite consensus disorder prediction 7 39 - -
Arst3g04494 426 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Arst3g04494 426 CDD RING-HC_RING1-like 57 122 - -
Arst3g04494 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 130 IPR013083 -
Arst3g04494 426 MobiDBLite consensus disorder prediction 263 300 - -
Arst3g04494 426 MobiDBLite consensus disorder prediction 1 39 - -
Arst3g04494 426 SMART ring_2 60 99 IPR001841 -
Arst3g04494 426 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Arst3g04494 426 PANTHER OS11G0578200 PROTEIN 16 425 IPR044592 -
Arst3g04494 426 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Arst3g04494 426 Coils Coil 11 31 - -
Arst3g04494 426 MobiDBLite consensus disorder prediction 224 238 - -
Arst3g04494 426 MobiDBLite consensus disorder prediction 183 302 - -
Arst3g04494 426 SUPERFAMILY RING/U-box 46 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04494 Arst-Chr3 120302035 120306717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04494 51 195 C3H Transcription Factor Family AT2G30580 26.452 1.07e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04494 K10695 - qsa:O6P43_031861 514.612