Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04488 ATGTCACGCTACAGAGGGCTTCGTTTCAAAAAAATACGCCGTCTGGGGACTTTACCTGGACTAACTAGTAAAAAGCATACAGTCGGAAGCGAATTTAGAAACCAATCACGCTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAAAAAAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGCCAATTGCTTAAATACATTCGTATCGCCGGAAAAGCCAAGGGGTCAACCGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTAGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAAACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAACCTCAAGATATTATTACAGCGAAAGATGAACAAAAATCGAAAGCTCTGATTCAAAATTCTCTGGATTCAGCCCCACGTGAGGAATTGCCAAACCATTTAACCCTTCATCCATTCCAATATAAAGGATTAGTAAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATCAACGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTTAA 609 0.3695 MSRYRGLRFKKIRRLGTLPGLTSKKHTVGSEFRNQSRSGKKSQYRIRLEKKKQKLRFHYGLTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHKHVLVNGRIVDIPSYRCKPQDIITAKDEQKSKALIQNSLDSAPREELPNHLTLHPFQYKGLVNQIIDSQWVGLKINELLVVEYYSRQT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04488 202 Gene3D - 89 185 IPR036986 GO:0003723
Arst3g04488 202 ProSiteProfiles S4 RNA-binding domain profile. 90 151 - -
Arst3g04488 202 Pfam Ribosomal protein S4/S9 N-terminal domain 3 89 IPR001912 GO:0019843
Arst3g04488 202 NCBIfam 30S ribosomal protein S4 3 200 IPR005709 GO:0003735|GO:0006412|GO:0015935
Arst3g04488 202 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 200 - -
Arst3g04488 202 CDD S4 90 149 - -
Arst3g04488 202 PANTHER 30S 40S RIBOSOMAL PROTEIN 23 164 IPR022801 GO:0003735|GO:0015935|GO:0019843
Arst3g04488 202 SMART s4_6 90 154 IPR002942 GO:0003723
Arst3g04488 202 FunFam 30S ribosomal protein S4, chloroplastic 89 185 - -
Arst3g04488 202 MobiDBLite consensus disorder prediction 20 44 - -
Arst3g04488 202 Hamap 30S ribosomal protein S4 [rpsD]. 1 200 IPR005709 GO:0003735|GO:0006412|GO:0015935
Arst3g04488 202 ProSitePatterns Ribosomal protein S4 signature. 88 112 IPR018079 GO:0019843
Arst3g04488 202 MobiDBLite consensus disorder prediction 23 41 - -
Arst3g04488 202 SMART Ribosomal_S4_2 3 89 IPR001912 GO:0019843
Arst3g04488 202 FunFam 30S ribosomal protein S4, chloroplastic 3 99 - -
Arst3g04488 202 Pfam S4 domain 90 137 IPR002942 GO:0003723
Arst3g04488 202 SUPERFAMILY Alpha-L RNA-binding motif 3 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04488 Arst-Chr3 120187244 120188159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04488 87 129 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 44.186 6.99e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04488 K02986 - gmx:3989263 362.073