Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04400 ATGGCGATGGCGGATGATGACGTGAACTTTTCGGAACTGTTCGATGGTGACGATGACGATAATATGTGCTATATCGATTTAACGACGGTGATGCAGGTTCTCAATGAGGATGACGACCCTCTGCAGAGTAGTCCTGAAGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATTCTTTTCAGCTTCAGAATGTGTGTCAAATGTTAGAAGAAGAACCGCATGTTTCTAGGTTGGAGGTGGATTCAGCCACAGACTGCTCTCCTTTCTGCTCAGATGTGTCGGATTCTGGGGCCAAAGATTCAGTTCATTTTTCAGTGAATCCTGTGCTTGAGCATGAACATGAAAATCAGGGACTTCCAAGTCAGGCTTGCTCTTCCACGGAAAAGACAGGGGTTTCTAAATTTGAGACATCTAGTTTTGGTATGGAAACTAGTTTCCCTGAGGCATATTCAAACAATGTGTCAGTCTGTCAGGACTATTTGAATGAGAGTACGTGGAAGAGTGGAAATGAGAGGCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCTCACAGTTCTATCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAGGATGCTGTTCGAGGTGCTTATGGGCAACAAGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGATGCTGATGATTCTATGCATGCTTCAACTTCAATTGATTCGGCTCTTTATCAAGGTTCCCATTTTCGTAGCGATTTGTGTGGTGACTATGCATATCCAAATTATCATCAGGGAGGAACATATGATAGATCATTTGCCAATGACCCTTTAAGGTTTATCCCTAATGGTATCGGTTCCAAGTCATGGACAAATAAAGAAATGATGACTAACCTGAAGGCTGAAAATATGGAGTTCTGTACAGATATGGCCCAAATCAGTGGTGGCATGCACTCAGTTAATACTGGGGGATCATCTATTCATGATAGTCAGTTTATGCTAGCAGATAGTGGCTATTCATCATATTTTTCTAGTAACAGTGCCTTTGAAGATGTGTCAGTTGCACTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAGGTGACAAACTGGTTACAAGTTACCAAAATAATTTTCAGAACAATGATTCTCAGTTCAATATTGGCCAGGAGGTGAAACAGTTACCAGATCTTTTTCCTTCTGTGAAATGTAAGAGTTATGGATCTTTCCCATGTGAGGATAGTTATACAGTAATAACTTCTGACAGAGCCAATCATTATCACGATACTGTTAATGGAACTGCTAGTAAACTTCAAAGAAACATGGTCTATTTGACTGTAGACCAATGTTTGCCCCATGCCCATGCTTCCATTGCCGTTGAGCAGCAGTTTGGTTGTGTTAAGAGAGGAGGGACCGAAATGATTCAACATAACCGCATTGATTCCCATCATTCTAAACGAACTGCTGAGAATTTCCGTGTTGAGGACACTGATGTTTGTATCATTGAAGACAACAGTCATCCTGTGCCTACAAGTCAATCTGAAGCTGTTCATAATTCCCTTAGTATATTTCAATCTTCCAGATATGTTGGTTCCCAACATTACGCGGTTGGAAGCACAAGGGTAAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAAATTAGTCTGCCAGTTGGATTGTTGGCGGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATACTTGCAGATGATCAGGGACTTGGGAAAACAGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTTTCTGCATGCCCCAATGCCCAAAATGGTGAATTAGAAACTTTGAATCTGGATGGAGAGGATGATGGTCTTCCTCAGAGCAGTTCGTTAAAGAAGGAATCTGATTCATGCGGAGATATGTCAATTAGAGATCCAATCAAGAGCAAGAGTTTATCTTTGCAAGCAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTCTGCCCCACTAGCGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCGCTAGCTGACAAAGAAGATGAAGAGAAGGGAATATTTGAAGATTCTGGGGTACCAAATAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAACGCATTGCTTGAGGCTGCTGCTCGACCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTCGGGTCTTCGTGCTAAGCGCAGATGGTGCTTGTCAGGGACCCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGCCCCTTATGACATTTATACATCATTCTGTTCTATGATTAAGAATCAGGTTAGCAGAAATCCTACAAAAGGGTATAAAAAGATACAAGCCGTCCTAAAGACAATAATGCTACGTCGGACCAAAGGAACATTTCTTGATGGGGAGCCTATTATATCCTTGCCACCTAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAATGGAGGAGCGTGATTTCTATTCGAAACTGGAGGCTGATTCTCGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTAAAACAAAATTATGTCAACATTTTGCTTATGCTTTTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTTAAGCGTTACAATTCCAACACTCTATGGAGATCTTCTGTTGAGACGGCAAAAAAGCTTCCCCAGGAAAAACAAGTATCCCTTCTTAAGTGTTTGGAGGCTTCTCTGGCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGACGCCGTTGTTTCAGTCTGCGGTCATGTCTTCTGTAGCCAGTGCATTTCGGAACATCTTACCGGTGATGACAATCAGTGTCCTGCTGCAAATTGCAAAAGTCGACTCAGCATGTCTACTGTTTTTGCGAAAGCGATGCTCAACGGTTGTATGTCTAACCAGGGTTGTGATAGTTCACCTGGTTCCTCTGGTTCTGAAGCGGATGAATCTGAGCCTTGGTCTCGGAGTCAGCCTTATGATTCTTCTAAAATTAAGGCTGCACTTGAGGTTTTAAAGTCATTGAGTAGGGTACAGTGCATTACACCCAAAGTTATATCTGCACATGGTACTCCTGCAGAAAATAGTGAATGCCCTGGGGTATCCTGTGATGTTAACAATGGGAAATGCTTGGAAGATATTCCTGAAAGTCAACATCTCTCTGGGAATAGCAGTTCTAATGGCACAGGAGAGAAAGCAATAGTATTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGCAATCTTCGATTCAGTATAGAAGACTTGATGGAACGATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTACCAGAGGTTTCGGTTATGATTATGTCTTTGAAGGCTGCGAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTGGATTTATGGTGGAACCCTACTACTGAAGATCAAGCAATTGATAGAGCACATCGAATTGGGCAGACCCGTCCTGTGACTGTTTTGCGTTTAACTGTGAAAGATACCGTTGAAGATCGTATTTTGGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAGAGTCGCCTGACAGTAGATGATTTAAAATACCTGTTCATGATGTGA 4005 0.4187 MAMADDDVNFSELFDGDDDDNMCYIDLTTVMQVLNEDDDPLQSSPEDFSLQNGSSGESGVHDSFQLQNVCQMLEEEPHVSRLEVDSATDCSPFCSDVSDSGAKDSVHFSVNPVLEHEHENQGLPSQACSSTEKTGVSKFETSSFGMETSFPEAYSNNVSVCQDYLNESTWKSGNERQFKHVGEDVESEHASHSSIIENGDLNFEDCVEDAVRGAYGQQESDLCTSFQISDMDADDSMHASTSIDSALYQGSHFRSDLCGDYAYPNYHQGGTYDRSFANDPLRFIPNGIGSKSWTNKEMMTNLKAENMEFCTDMAQISGGMHSVNTGGSSIHDSQFMLADSGYSSYFSSNSAFEDVSVALSTYASHGDQSLCMKAEGDKLVTSYQNNFQNNDSQFNIGQEVKQLPDLFPSVKCKSYGSFPCEDSYTVITSDRANHYHDTVNGTASKLQRNMVYLTVDQCLPHAHASIAVEQQFGCVKRGGTEMIQHNRIDSHHSKRTAENFRVEDTDVCIIEDNSHPVPTSQSEAVHNSLSIFQSSRYVGSQHYAVGSTRVKACDERNILQVALQDLSQPKSEISLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKFSACPNAQNGELETLNLDGEDDGLPQSSSLKKESDSCGDMSIRDPIKSKSLSLQAKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKEDEEKGIFEDSGVPNRKRKNPSNSSKSGKKRLDNALLEAAARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYAPYDIYTSFCSMIKNQVSRNPTKGYKKIQAVLKTIMLRRTKGTFLDGEPIISLPPKFVELKKVEFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVETAKKLPQEKQVSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCSQCISEHLTGDDNQCPAANCKSRLSMSTVFAKAMLNGCMSNQGCDSSPGSSGSEADESEPWSRSQPYDSSKIKAALEVLKSLSRVQCITPKVISAHGTPAENSECPGVSCDVNNGKCLEDIPESQHLSGNSSSNGTGEKAIVFSQWTRMLDLLEVCLKQSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04400 1334 Pfam SNF2-related domain 604 983 IPR000330 GO:0005524|GO:0140658
Arst3g04400 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 1333 IPR027417 -
Arst3g04400 1334 SMART ultradead3 580 896 IPR014001 -
Arst3g04400 1334 MobiDBLite consensus disorder prediction 649 676 - -
Arst3g04400 1334 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 338 1333 - -
Arst3g04400 1334 ProSitePatterns Zinc finger RING-type signature. 1037 1046 IPR017907 -
Arst3g04400 1334 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Arst3g04400 1334 SMART ring_2 1022 1060 IPR001841 -
Arst3g04400 1334 Gene3D - 554 643 IPR038718 -
Arst3g04400 1334 ProSiteProfiles Zinc finger RING-type profile. 1022 1061 IPR001841 -
Arst3g04400 1334 Pfam Helicase conserved C-terminal domain 1175 1276 IPR001650 -
Arst3g04400 1334 MobiDBLite consensus disorder prediction 37 61 - -
Arst3g04400 1334 CDD SF2_C_SNF 1179 1286 - -
Arst3g04400 1334 Gene3D - 795 907 IPR038718 -
Arst3g04400 1334 Gene3D - 679 769 IPR038718 -
Arst3g04400 1334 MobiDBLite consensus disorder prediction 760 795 - -
Arst3g04400 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1015 1073 IPR013083 -
Arst3g04400 1334 SMART helicmild6 1193 1276 IPR001650 -
Arst3g04400 1334 MobiDBLite consensus disorder prediction 760 780 - -
Arst3g04400 1334 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 788 918 - -
Arst3g04400 1334 SUPERFAMILY RING/U-box 1019 1072 - -
Arst3g04400 1334 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 677 765 - -
Arst3g04400 1334 Gene3D - 921 1333 IPR027417 -
Arst3g04400 1334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 868 IPR014001 -
Arst3g04400 1334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1155 1329 IPR001650 -
Arst3g04400 1334 CDD DEXDc_SHPRH-like 584 906 - -
Arst3g04400 1334 Pfam Zinc finger, C3HC4 type (RING finger) 1022 1058 IPR018957 GO:0046872
Arst3g04400 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 906 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04400 Arst-Chr3 119172365 119180739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04400 475 1333 RAD5 or RAD16-like Gene Family AT1G61140 60.953 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst3g04400 SNF2_N 1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04400 - - gmx:100802436 1718.36