Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04269 ATGGATATTTCTTCACTCAGAGGGTTAACTGATCTGGAAATAATGGAAGATCCTACCTATCTTCATCAGTGGCATTTGAGCTCTATTTATGAGCCTACTTTACTTCCGATTGCTGCTGCTTTTGGAGAGACTTTACAGCAACATTCATTCTCTCATCCCAGTTTCAACTCCAAAACTTCCATGGAAACTTCACTTTCTAACATTGACAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCAACTAAAACTCCATCCGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCCAATTATATAAACCAGTTGGAAGTGGTGAAGTCTAAGGATGAGATGGTTTGTCCTAAAATGAATGACACAACTCCTAAAGACATGAACTTTCAAGGAACATTAGGAAATCAATATGTGTTCGAAGCTAGTCAGGCGACTAAGCATGTAGGGCCACGTTCTAGACTTTCTCAACCTCAAGACCACATAATAGCCGAAAGGAAGCGTCGAGAGAAGCTCAGTCAACGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTAAAGCAATTGCAAGAGAAGGTGAAGGCTCTTGAAGAAGAACAGAACAAGAGAAAAGCTGTGGAATCTGTAGTATTTGTGAAAAAATCTCAATTATCCAATGATGCAGAAGACGCTTCTTTAGAATATGAGGGTATCTTCCATGAGGCATTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCGTAAGAATCCACTGCGAGAAGAACAGAGGAGTTGTAGAAAAATCAATCAATCAAATTGAGAAACTCCATCTAAAAGTTACCAATAGCAGTGCCATGACATTTGGGAGCTGGGCCTTAGATATAACTATTATTGCTCAGATGGAAAAGGGATTTTGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 1017 0.3982 MDISSLRGLTDLEIMEDPTYLHQWHLSSIYEPTLLPIAAAFGETLQQHSFSHPSFNSKTSMETSLSNIDRPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEVVKSKDEMVCPKMNDTTPKDMNFQGTLGNQYVFEASQATKHVGPRSRLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNKRKAVESVVFVKKSQLSNDAEDASLEYEGIFHEALPEIEARFCDKNVLVRIHCEKNRGVVEKSINQIEKLHLKVTNSSAMTFGSWALDITIIAQMEKGFCMTVKELVRNLRSAFASII 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04269 338 Coils Coil 198 228 - -
Arst3g04269 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Arst3g04269 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Arst3g04269 338 CDD bHLH_AtNAI1_like 162 234 - -
Arst3g04269 338 Gene3D - 157 232 IPR036638 GO:0046983
Arst3g04269 338 SMART finulus 165 214 IPR011598 GO:0046983
Arst3g04269 338 PANTHER BHLH TRANSCRIPTION FACTOR 42 334 - -
Arst3g04269 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04269 Arst-Chr3 118004918 118007717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04269 1 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.054 4.77e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g04269 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04269 - - aprc:113852973 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04269 3 118004918 118007717 Arst3g04269 3 118004918 118007717 ECH
Arst3g04269 3 118004918 118007717 Arst10g00576 10 4819971 4822871 PCT