Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04252 ATGCCTCCTCCATTTGATATGATTTCCAAGATACATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTATACTCTCCTTTGGTAACCATGAGGTTCCTAACACAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGATAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTACCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGAATTTTTAGTTGTGCGCTGTGCATTATTTGGGGACTATATTAATCAAGTAAATCATTTCCTTACCTCTGGCTATGTGGAGCAGCCTGTTGTATTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTCATGTATGCCACTCAAATATTATTTAATCCTGATTTTCCTGAAGTTGTTGAATTCAGTATGGTTGAGCAAGGTGTCAATGGTACTCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTATCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTCAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACCGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAACGACTCATTGGAAAGAAGCTACTGCTGAAGGTTGATACCAAAGGAGTGCCACATGATACATTTTATGGCAGTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCGAATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCCTGATTTACACAAATCTATTCCCTGTGGAGAAGGGGAGGTTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGATGGTGAGTCTTCTGGGCCTGCTGTTTCTGGAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAGAAAACACCTAGCAATGATACTGAGTTGTTGTCCCATGTTATTGATGCACCTTCCCATTATGGAGAGAAGCTTATTCATGAGAATTATGTTGTCACTTCCAAGGGCAAGAGAAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGTAGATGGGCCTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1596 0.3897 MPPPFDMISKIHPPREAWRLKVRVLRLWVILSFGNHEVPNTMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHDSYRATSHEFKLVFLHRTTIVAVDEDVIPKTCFNMLPFSELLNMTQDYEFLVVRCALFGDYINQVNHFLTSGYVEQPVVFIQLAKVKFFRGQVGLQNVMYATQILFNPDFPEVVEFSMVEQGVNGTQPLFIANEGKVISLEDDFMRLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLQDHSGEGIFLLFDREASYLLKKSCADLFTEVQRDASLVCGDTYPPIFQRLIGKKLLLKVDTKGVPHDTFYGSFRVRRICDDPTIIAMFELPNYDADDESTPKKEPDLHKSIPCGEGEVGIKKESSKTFIKSEKVDGESSGPAVSGGTEFASLINGEHGKDEKTPSNDTELLSHVIDAPSHYGEKLIHENYVVTSKGKRNLNPQFEEAAADVDGPGFKIAKVNGV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04252 531 Pfam Replication factor-A C terminal domain 254 366 IPR013955 -
Arst3g04252 531 CDD RPA1_DBD_C 240 383 IPR047192 -
Arst3g04252 531 Gene3D - 4 112 IPR012340 -
Arst3g04252 531 MobiDBLite consensus disorder prediction 403 422 - -
Arst3g04252 531 CDD RPA1_DBD_A_like 19 107 - -
Arst3g04252 531 Gene3D - 229 388 IPR012340 -
Arst3g04252 531 PANTHER OS03G0429900 PROTEIN 7 368 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst3g04252 531 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Arst3g04252 531 Gene3D - 136 211 IPR012340 -
Arst3g04252 531 SUPERFAMILY Nucleic acid-binding proteins 237 387 IPR012340 -
Arst3g04252 531 SUPERFAMILY Nucleic acid-binding proteins 139 204 IPR012340 -
Arst3g04252 531 Pfam Domain of unknown function DUF223 43 136 IPR003871 -
Arst3g04252 531 CDD RPA1_DBD_B_like 139 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04252 Arst-Chr3 117827761 117830631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04252 11 334 Core DNA Replication Machinery Family AT5G08020 21.204 8.68e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04252 - - ahf:112744598 824.313