LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g04240	ATGGCGGTTTCATCCATTTTGTTCCTCTACGTAGTCATCTTCCCTTATTATGCATCATCCTTAACCTTCAACTTCACCAGTTTTGATTCCAACAACAATAACAACACCCTAAGATATGAAGCATGGGCAGAAACAGAGGAAGAAACTATCCAGCTGATAGGAAAAGCGCACTTGAATAACAGCATTGGTCGTGCAGTGTACTACAAACCCATGCACCTGTGGGACAAAGCTTCAAGGAACCTCACACACTTCACAACCCATTTCTCATTCATCATTGATTCCCAGAATAGAACTAACTATGCAGATGGACTTGCATTCTTCCTCCGCCCCAACGGTTCCACCGTCCCCAGTGCCACGGCCGGAAGAACTCTGGGCCTCACTGTTGACAACCAAGATACACTCAACATAACTGTAGACCCCTTTGTGGCCGTGGAATTCGATATCTTTAAGAATTATTTCGATCCGCCCAATGAACATGTGGGTATTGATGTTAACTCCTTGAGGTCTGTTGCTAATACCACATGGTTTTCTAAGGCTAACATTATGGGAGGGAAAGTCAATGAGGCTTGGATCAGTTACAATGCTACTTCCATGAATCTTAGTGTTGTCTTCACTGGTTTCAACTCAGCCACCAACACTACCATGCTGCAGAATCTGTTTGCTGTGGTTGACTTGAGAGAATATCTTCCTGAATATGTTGCAGTTGGATTCTCAGCTGCCACAGGAACTTCTTTTGCTTTGCACAAAATTCTCTCTTGGGATTTAAACTCAACTTTGGGAGACGACATAGCGAAAGCAGAATCCCCTGTTGCAATGAATCCATCTTCCAGTGCAGCTCCCAATCATGAGAAAAAGGCCAGCAACACCGGACCAACAGTGGGATTGGGAATTGGTGGAGTTGTTGTGTTTGTTGGGTTGTGTTTGGTTTTGGTTGGATTGTGGAAAAAGTGGAAGAAAGGAAGTGATGAAGAGGAAGATGATGATCAAGATTTTGAGGAGTATGTGGGGGAAGATTTCGGAAGAGGAGCAGGACCCAAAAAGTATTCATTTTCTGAATTAGCGTTTGCAGCTGATAACTTCAAAGATGAGAACAAGCTTGGTCAAGGTGGATTTGGAGGTGTTTATAGAGGGTATCTCAAAGATATCAACTCCTACGTTGCCATCAAGAGGGTTTCAGAACATTCTCATCAAGGAATAAAGGAATTCGCATCGGAAGTAAAGATCATTAGCCGGCTTAGGCACCGAAATCTTGTCCAACTGATTGGTTGGTGTCCGAAAAGGAAGAAGCTCTTGCTTGTATATGAGTACATGCCTAATGGAAGTTTAGATGTTCATCTTTTCAAGAAGCAGAATCTGCTGGGATGGACAGTTAGATACAACATAGCTCGAGGCTTGGCGGCCGCACTGCTATACTTGCACGAAGAATGGGAACAATGTGTTGTGCATAGGGACATCAAATCAAGCAACATCATGCTGGATTCAGAGTTCAATGCCAAACTTGGGGATTTTGGGCTAGCAAGGCTTGTTGACCATGCAAAAGGCGCGCAAACCACGGCTCTAGCCGGTACTCCGGGCTACATGGCTCCAGAATGCAATACCACATGGAGGGCTACTAAAGAATCAGATGTGTACAGTTTTGGAGTGGTGGCATTGGAGATAGCATGTGGAAGGAAACCCATCAAATATAAGGCTCCGGAAAGTGAAATCAATATTGTAGAATGGGTGTGGGGTCTTTATGGAAGTGGAAGGGTTCTTGAAGCAGCGGATGAAAGGCTAGATGGAGATTTTGTAAAGGAACAAATGAAATGCTTGATGGTTGTTGGGCTGTGGTGCGCTCACCCATGTCACAACAATAGGCCTTCAATAAGACAAGCCATTCAAGTTCTCAACTTTGAAGCTCCCTTACCCACTCTTCCAGCAAAGTTGCCAGTACCAACCTATCTTGATGGGTGA	1953	0.4434	MAVSSILFLYVVIFPYYASSLTFNFTSFDSNNNNNTLRYEAWAETEEETIQLIGKAHLNNSIGRAVYYKPMHLWDKASRNLTHFTTHFSFIIDSQNRTNYADGLAFFLRPNGSTVPSATAGRTLGLTVDNQDTLNITVDPFVAVEFDIFKNYFDPPNEHVGIDVNSLRSVANTTWFSKANIMGGKVNEAWISYNATSMNLSVVFTGFNSATNTTMLQNLFAVVDLREYLPEYVAVGFSAATGTSFALHKILSWDLNSTLGDDIAKAESPVAMNPSSSAAPNHEKKASNTGPTVGLGIGGVVVFVGLCLVLVGLWKKWKKGSDEEEDDDQDFEEYVGEDFGRGAGPKKYSFSELAFAADNFKDENKLGQGGFGGVYRGYLKDINSYVAIKRVSEHSHQGIKEFASEVKIISRLRHRNLVQLIGWCPKRKKLLLVYEYMPNGSLDVHLFKKQNLLGWTVRYNIARGLAAALLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARLVDHAKGAQTTALAGTPGYMAPECNTTWRATKESDVYSFGVVALEIACGRKPIKYKAPESEINIVEWVWGLYGSGRVLEAADERLDGDFVKEQMKCLMVVGLWCAHPCHNNRPSIRQAIQVLNFEAPLPTLPAKLPVPTYLDG	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g04240	650	Gene3D	Transferase(Phosphotransferase) domain 1	437	649	-	-
	Arst3g04240	650	CDD	STKc_IRAK	366	630	-	-
	Arst3g04240	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Arst3g04240	650	Gene3D	-	18	272	-	-
	Arst3g04240	650	SUPERFAMILY	Protein kinase-like (PK-like)	345	638	IPR011009	-
	Arst3g04240	650	SUPERFAMILY	Concanavalin A-like lectins/glucanases	18	260	IPR013320	-
	Arst3g04240	650	ProSiteProfiles	Protein kinase domain profile.	360	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst3g04240	650	FunFam	L-type lectin-domain containing receptor kinase IX.1	345	436	-	-
	Arst3g04240	650	Pfam	Protein kinase domain	360	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst3g04240	650	FunFam	Lectin-domain containing receptor kinase A4.3	437	649	-	-
	Arst3g04240	650	FunFam	L-type lectin-domain containing receptor kinase IX.1	19	268	-	-
	Arst3g04240	650	CDD	lectin_legume_LecRK_Arcelin_ConA	21	259	IPR001220	GO:0030246
	Arst3g04240	650	PANTHER	-	46	632	-	-
	Arst3g04240	650	Gene3D	Phosphorylase Kinase; domain 1	345	436	-	-
	Arst3g04240	650	ProSitePatterns	Legume lectins alpha-chain signature.	229	238	IPR000985	-
	Arst3g04240	650	ProSitePatterns	Protein kinases ATP-binding region signature.	366	389	IPR017441	GO:0005524
	Arst3g04240	650	Pfam	Legume lectin domain	20	264	IPR001220	GO:0030246
	Arst3g04240	650	SMART	serkin_6	360	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g04240	Arst-Chr3	117684848	117691832	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g04240	1	647	Receptor kinase-like Gene Family	AT5G10530	46.353	0.0	531

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Arst3g04240		Pkinase	1.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g04240	-		-	gmx:100782344	815.839