Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04202 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATATTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGGCACCACCTGGTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAAGCTTATGCCCCACTGCCTTATGGTGGACAACCGATGGTCCATTTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCGTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTTCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCAGATAGGACAGTCTAA 615 0.4358 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNIQFEKPAQLGDVLAMAPPGYPYPDPYYRSIFAPYDTQAYAPLPYGGQPMVHFQLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESERKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04202 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 200 IPR001289 GO:0003700|GO:0006355
Arst3g04202 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Arst3g04202 204 MobiDBLite consensus disorder prediction 178 198 - -
Arst3g04202 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Arst3g04202 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Arst3g04202 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Arst3g04202 204 Gene3D - 108 170 - -
Arst3g04202 204 MobiDBLite consensus disorder prediction 166 204 - -
Arst3g04202 204 MobiDBLite consensus disorder prediction 1 44 - -
Arst3g04202 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Arst3g04202 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04202 Arst-Chr3 117324239 117328417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04202 49 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 63.226 1.15e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst3g04202 CBFB_NFYA 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04202 K08064 - gmx:100499754 303.523