Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04201 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATATTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGGCACCACCTGGTTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAAGCTTATGCCCCACTGCCTTATGGTGGACAACCGATGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCGTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTTCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCAGATAGGACAGTCTAA 603 0.4362 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNIQFEKPAQLGDVLAMAPPGYPYPDPYYRSIFAPYDTQAYAPLPYGGQPMLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESERKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04201 200 MobiDBLite consensus disorder prediction 174 194 - -
Arst3g04201 200 PRINTS CCAAT-binding transcription factor subunit B signature 107 129 IPR001289 GO:0003700|GO:0006355
Arst3g04201 200 PRINTS CCAAT-binding transcription factor subunit B signature 138 161 IPR001289 GO:0003700|GO:0006355
Arst3g04201 200 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 196 IPR001289 GO:0003700|GO:0006355
Arst3g04201 200 SMART cbf3 103 164 IPR001289 GO:0003700|GO:0006355
Arst3g04201 200 MobiDBLite consensus disorder prediction 1 45 - -
Arst3g04201 200 MobiDBLite consensus disorder prediction 1 44 - -
Arst3g04201 200 MobiDBLite consensus disorder prediction 162 200 - -
Arst3g04201 200 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 106 161 IPR001289 GO:0003700|GO:0006355
Arst3g04201 200 Gene3D - 104 166 - -
Arst3g04201 200 ProSitePatterns NF-YA/HAP2 subunit signature. 109 129 IPR018362 GO:0003677|GO:0016602
Arst3g04201 200 ProSiteProfiles NF-YA/HAP2 family profile. 104 164 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04201 Arst-Chr3 117324239 117328417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04201 49 199 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.500 5.31e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst3g04201 CBFB_NFYA 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04201 K08064 - gmx:100499754 291.197