Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04200 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATATTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGGTCCATTTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCGTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTTCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCAGATAGGACAGTCTAA 513 0.4269 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNIQFEKPAQLGDVLAMVHFQLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESERKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04200 170 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 MobiDBLite consensus disorder prediction 1 42 - -
Arst3g04200 170 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 MobiDBLite consensus disorder prediction 144 164 - -
Arst3g04200 170 Gene3D - 74 136 - -
Arst3g04200 170 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 166 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Arst3g04200 170 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 76 131 IPR001289 GO:0003700|GO:0006355
Arst3g04200 170 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04200 Arst-Chr3 117324239 117328418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04200 33 150 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.254 1.66e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst3g04200 CBFB_NFYA 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04200 K08064 - gmx:100499754 236.498