Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04181 ATGGGAGATATATTGCCGCATAAATATGGTTGCTGCTTAGTATTCTGGAGACGCGGAACAACCTCCGAGACTTCTGCTCCCATTGCCAAAATCAACGACAAGAATTTTGTGAAGGAACCGAACCCAAAATACATGAAAAGGCATGGAGGTGGCTCCAAAGATGCATCTTCGGTGCCAACAACTACGTCCAAAGCCCAAGATTATTCATCACGTTCTAACTCCTCCAAGCCTCATCAATACAAGCCAACTCTTGCTGTGACCGAAAATAAAGTACGAGGCACATCAAGAGTTTCACCTGCTGAGGGCTATGTCACTCAAGGAAGGAGGGTGCCCCAAGAAGCCATTGGCATATCCGGCGAGCTCGAAAGAATGATCATGGATCACCACAAGTCCAATGGAAGCAGTACCCTTGTTAGAGCTTCATCAAGCAATGTCATGCTGGCTGGTGATTTAGGTAACCTGAGGCAACAGAGTACCAATTCAAGCAATAGTGCTGTGGGCAAACATATTAGGCAAGAAAACCCAGACCCGGTTGCTTATAACGGAAGAAACACAAATCCTACGGAGCAAAATGTGGCCAGAATAGAAAAGAAAGACTCTGCTTCTTTTTGCAGAGCACTATCTATTAGAATGGATCCAGAGCAGTTGAAGATAATGGGAAATGAAGATTACAAGAATGGGAGGTTTGAAGAGGCTTTAGCTTTGTATGATGCTGCGATTGCGCTTGATCCGAATAAGGCATCGTATAGGAGCAACAGAAGTGCAGCATTAACTGCACGTGGTAGGCTCTTGGAAGCTGTGTTTGAGTGTAGAGAAGCCATCCAAATAGAGCCTCATTACCATAGAGCTCATCATCGATTGGGAAACTTGTACACAAGATTAGGGGAAACAGATAAGGCCCTTTATCATTATAAACTTGCAGGACCTGAGGCTAATCCAGAAGAGATTGCAAGAGCAAAGAATCTTCAGCTCCAGCTAAACAAGTGCACCGAGGCTCGCAGGTTAGGAGATTGGAACAACCTCATCAAGGAGACTAATAACGCTATATCATGCGGTGCAGATTCCGCTCCACAGATATTTGCATTGCAAGCAGAAGCATTTTTAAAGCTCCGAAGGCATCAAGATGCAGACGAAGCAATGTCAAAGGGTCCAAAGTTTAAAGTTGAGGATTGTACCAAGTTCTTTGGAGCCATAAGTAATGCAAATTTGTTGGTGACTCGGGCTCAAGTTGATTTGGTTGCTGGCAGATTTGAAGCTGCATTAGAAGCAGTTCAAGAAGCAAGTAGGCTAGACTCAAATAACAGGGAGGTTAGCAAAGTGATGAGGAAGGCGAAAGGCATGGCAGCTGCAAGATCAAATGGCAACAACCTTTTCAAGGAATCGAAATTCTCCGAGGCTTGTGCTGCCTATGAAGAGGGTCTTGCCCATGATCCTTATAACTCGGTTTTGCTATGCAACCGAGCTGCTTGTAGAGCAAACTTAGCTCAATACGACAAAGCTGTGGAAGATTGTACGGCTGCTCTTAGTTTGCGCCCATCTTACACCAAGGCCAGGTTGAGAAGAGCTAATTGTAATGCAAAGTTGAAAAAATGGGAAGCTGCAATACAAGACTATGAAATATTGGTAAAAGAGACACCGGAAGATGAGGAAGTAAGTAGGGCTTTGTTGGAGGCCAAAGCGCAACTCAGTAAAAAGTAA 1698 0.4446 MGDILPHKYGCCLVFWRRGTTSETSAPIAKINDKNFVKEPNPKYMKRHGGGSKDASSVPTTTSKAQDYSSRSNSSKPHQYKPTLAVTENKVRGTSRVSPAEGYVTQGRRVPQEAIGISGELERMIMDHHKSNGSSTLVRASSSNVMLAGDLGNLRQQSTNSSNSAVGKHIRQENPDPVAYNGRNTNPTEQNVARIEKKDSASFCRALSIRMDPEQLKIMGNEDYKNGRFEEALALYDAAIALDPNKASYRSNRSAALTARGRLLEAVFECREAIQIEPHYHRAHHRLGNLYTRLGETDKALYHYKLAGPEANPEEIARAKNLQLQLNKCTEARRLGDWNNLIKETNNAISCGADSAPQIFALQAEAFLKLRRHQDADEAMSKGPKFKVEDCTKFFGAISNANLLVTRAQVDLVAGRFEAALEAVQEASRLDSNNREVSKVMRKAKGMAAARSNGNNLFKESKFSEACAAYEEGLAHDPYNSVLLCNRAACRANLAQYDKAVEDCTAALSLRPSYTKARLRRANCNAKLKKWEAAIQDYEILVKETPEDEEVSRALLEAKAQLSKK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04181 565 Pfam Tetratricopeptide repeat 283 306 IPR019734 GO:0005515
Arst3g04181 565 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 53 564 IPR044534 -
Arst3g04181 565 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Arst3g04181 565 MobiDBLite consensus disorder prediction 38 101 - -
Arst3g04181 565 SUPERFAMILY TPR-like 448 558 IPR011990 GO:0005515
Arst3g04181 565 Pfam Tetratricopeptide repeat 495 548 - -
Arst3g04181 565 MobiDBLite consensus disorder prediction 54 94 - -
Arst3g04181 565 Coils Coil 521 541 - -
Arst3g04181 565 Gene3D Tetratricopeptide repeat domain 211 565 IPR011990 GO:0005515
Arst3g04181 565 SMART tpr_5 213 246 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 247 280 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 447 480 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 515 548 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 481 514 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 401 434 IPR019734 GO:0005515
Arst3g04181 565 SMART tpr_5 281 315 IPR019734 GO:0005515
Arst3g04181 565 MobiDBLite consensus disorder prediction 154 169 - -
Arst3g04181 565 SUPERFAMILY TPR-like 213 436 IPR011990 GO:0005515
Arst3g04181 565 MobiDBLite consensus disorder prediction 154 186 - -
Arst3g04181 565 Pfam TPR repeat 220 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04181 Arst-Chr3 116730883 116732926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04181 214 348 U-box Gene Family AT3G07370 30.612 8.07e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04181 - - aip:107633661 813.142