Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04147 ATGACGGATCAAATAGTTTCTTCTCCTCTAATTCCTCCTCCATCTATCACCCACTCTTCCGCCATCGACCTTGAAGCCGGTTCCTCCGAACAAATCCAATGCCGGATTTGTCTCGAAACAGATGGCAGAGATTTCATTGCTCCTTGCAAATGCAAAGGTACATCAAAATATGTACATCGAGAGTGTTTGGATCACTGGCGTGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGTACTACTTGCAAGGCACCTTATCATTTGCGTGTTCATGGTGCTGCAGATAGGAAATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTTCTGGCAGTTCAGCTTGTCATTGCTTCATTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTACTGGCTTCATCTTGTTTGGGGTTTTGATAGTGAGCCAAGCTTTTACTACATATGTGGAGCCCTCTTGTTTTTTGTGTTGCTTGGCCTATCAGGATGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCACAGCCTTGTCGAGAAATCTGTTTTTGTTGCTGTCATCCTGGAGTCTGTGCAGACTGCCATTTGCCGGGGACACTTTGCATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACGATGGCAACTGAATGTGGAAGTTGCATGGGAGGTGCTGGCGAAGCAGGGCTGCCATTACTATTCATAATGGCTTTGATTTTTCTCGGACTCTTTACTCTAATTGGGATATTTTACAGTGTATTAGTGGCTACCATGATAGGACAACGAATATGGCAGCGTCATTATCATATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGATATCGACGGAGAGGTGTCACGGTCTGACTGGTCTCCTCCAACTCTCCCACCGGAACATGTTCAACAGCTGAAATCACTGGGCCTTTTATGA 972 0.4414 MTDQIVSSPLIPPPSITHSSAIDLEAGSSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLHLVWGFDSEPSFYYICGALLFFVLLGLSGCFITCYDRRVRNDLAQPCREICFCCCHPGVCADCHLPGTLCMWTDCTACFESCGTMATECGSCMGGAGEAGLPLLFIMALIFLGLFTLIGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVEDIDGEVSRSDWSPPTLPPEHVQQLKSLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04147 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Arst3g04147 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Arst3g04147 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Arst3g04147 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Arst3g04147 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 322 - -
Arst3g04147 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 94 IPR013083 -
Arst3g04147 323 SUPERFAMILY RING/U-box 28 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04147 Arst-Chr3 115921200 115925249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04147 1 323 C3H Transcription Factor Family AT2G22120 80.247 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04147 - - gmx:100791777 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04147 3 115921200 115925249 Arst3g04147 3 115921200 115925249 ECH
Arst3g04147 3 115921200 115925249 Arst10g01218 10 15553151 15557181 PCT