Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04072 ATGGACTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAGGACCACGACGACAAAGACTCCTCTAAGCTCAAGAAGAAGGACTCCACCGACAGAACAGATAGGTCTTACCGCAAGCGTGACGTTGACGACGATCTCGACGCTGCCGACGACAAGCGCACCAAGCGCTCCAGGCACGACGACGACGACACCACTGGCTCCAAGAGGGACCGTGACCGTGACCGCGAACGGTCCAGCCGTGACAGGGAGCGCCACCGCAGTGAGAGGGAGAAGGATAGGGATAGGGATAGGGACGGGGAGAGGAGCAGCAGAGAAAAAGAGAAGGAGAGGGATCGGGATAAGGACAGAGAGAGGAGGGACAGAGACAGAGATAGAGATAGGGACAAGGAGAGGGAGAGGAGAGATAGGGAGAGAGAAAAGGAACGCGAGAGAAGGGAGAGGGAGAGGGAGAAGGAAAAGGAGAAAGAGAGAGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCCAGAGAGACAGAGACAGAGAAAGAGAACCAGATTTCGAATCTCGCGATGGCCGGAGGTTTAGGGATAAAAAAGAGGCTGCGGAGCCCGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTTAGAGATGTTCGTCTGATCATGGATAGAAACTCAAGACGTTCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTTCTTCTTGGTCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTACTGCTTCCACTGGAGCTGCTGGCGTAGCAGGACCATATGGTGCCATGGACAGAAAGCTGTATGTGGGCAATCTTCATTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGGCCGGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCACAGAATTTAAACGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGGAGCCAAGATACAACTGCAAAATCTGCAGATCTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCATGGCCTTCCTGGAAGCAATGGGGTGCCTGCTGTGAATGGGGCTGTTCCTATTCAGCCAACCATGGGTTTGCCTATTGGTAATCCAGGTATAATACCTGCACCTGCTCTCCCAACTCAAATTTTGCCTGCTCCAGTGGCAGAACCTGTAGGGATCCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGACCCTAGCACCGAGACTGAGCCAGATTTTGATATAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCGGGTTTTGTATATTTGCGGTTTGAAACGGTGGAAGCAGCAAGCGCTGCACAACGGGCAATGCACTTGAGATGGTTTGCACGCAGATTGATTTCAGCTGTGTTCATGCAACCTCAGGTCTACGAAGCTAAGTTTAAAGGAGAAGACTGA 1728 0.489 MDFDEYEYLEKTVEDHDDKDSSKLKKKDSTDRTDRSYRKRDVDDDLDAADDKRTKRSRHDDDDTTGSKRDRDRDRERSSRDRERHRSEREKDRDRDRDGERSSREKEKERDRDKDRERRDRDRDRDRDKERERRDREREKERERREREREKEKEKEREERERSRRSRSRSQRDRDREREPDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGAAGVAGPYGAMDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQNLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLALNAQSRALLMQKLADRHGLPGSNGVPAVNGAVPIQPTMGLPIGNPGIIPAPALPTQILPAPVAEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHLRWFARRLISAVFMQPQVYEAKFKGED 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04072 575 Gene3D - 306 402 IPR012677 -
Arst3g04072 575 FunFam Splicing factor CC1-like 294 399 - -
Arst3g04072 575 Coils Coil 126 164 - -
Arst3g04072 575 MobiDBLite consensus disorder prediction 1 209 - -
Arst3g04072 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 499 IPR029123 -
Arst3g04072 575 CDD RRM3_RBM39_like 480 562 - -
Arst3g04072 575 SUPERFAMILY RNA-binding domain, RBD 476 563 IPR035979 GO:0003676
Arst3g04072 575 Gene3D - 201 294 IPR012677 -
Arst3g04072 575 CDD RRM2_RBM23_RBM39 312 389 - -
Arst3g04072 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Arst3g04072 575 CDD RRM1_RBM39_like 209 281 - -
Arst3g04072 575 MobiDBLite consensus disorder prediction 9 207 - -
Arst3g04072 575 FunFam Splicing factor, CC1-like protein 476 575 - -
Arst3g04072 575 FunFam Splicing factor CC1-like 132 293 - -
Arst3g04072 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Arst3g04072 575 SMART rrm1_1 311 384 IPR000504 GO:0003723
Arst3g04072 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Arst3g04072 575 SMART rrm1_1 209 281 IPR000504 GO:0003723
Arst3g04072 575 NCBIfam splicing factor, CC1-like family 92 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst3g04072 575 Gene3D - 476 574 IPR012677 -
Arst3g04072 575 SUPERFAMILY RNA-binding domain, RBD 201 290 IPR035979 GO:0003676
Arst3g04072 575 SUPERFAMILY RNA-binding domain, RBD 309 387 IPR035979 GO:0003676
Arst3g04072 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 556 IPR000504 GO:0003723
Arst3g04072 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Arst3g04072 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Arst3g04072 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04072 Arst-Chr3 114271784 114277160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04072 290 383 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 4.79e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04072 K13091 - gmx:100802446 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04072 3 114271784 114277160 Arst3g04072 3 114271784 114277160 ECH
Arst3g04072 3 114271784 114277160 Arst3g04072 3 114271784 114277160 PCT