Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04051 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACAATAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTACAGCAGACAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGTGCCGTTGATGAAGTTGTGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACGTTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATTAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATTATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGATGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGCCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCGTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGATCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGATCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGTGTTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAATGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1458 0.439 MISAISWIPIGASKAEPTIAEPPSKEEIQDIITTAAASTADSENEEEAGDERMDDAGGAVDEVVRALNVADALGKADKLDDIALGLKELDMERYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDAGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKKIRNVLASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHHEPKILLSGSFDHTVILRDGRMPSHPGYKWSVTADVESLAWDPHTNHDFVVLSLEDGTVKCFDVRTAMSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04051 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 424 - -
Arst3g04051 485 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Arst3g04051 485 SMART WD40_4 239 281 IPR001680 GO:0005515
Arst3g04051 485 SMART WD40_4 328 368 IPR001680 GO:0005515
Arst3g04051 485 SMART WD40_4 379 419 IPR001680 GO:0005515
Arst3g04051 485 SMART WD40_4 284 324 IPR001680 GO:0005515
Arst3g04051 485 SMART WD40_4 177 216 IPR001680 GO:0005515
Arst3g04051 485 SMART WD40_4 424 464 IPR001680 GO:0005515
Arst3g04051 485 Pfam WD domain, G-beta repeat 383 419 IPR001680 GO:0005515
Arst3g04051 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 286 - -
Arst3g04051 485 SUPERFAMILY WD40 repeat-like 199 470 IPR036322 GO:0005515
Arst3g04051 485 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
Arst3g04051 485 Gene3D - 86 330 IPR015943 GO:0005515
Arst3g04051 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 290 IPR001680 GO:0005515
Arst3g04051 485 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 479 IPR044285 GO:0006364
Arst3g04051 485 FunFam Transducin/WD40 repeat-like superfamily protein 75 329 - -
Arst3g04051 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 473 IPR001680 GO:0005515
Arst3g04051 485 FunFam Putative WD repeat-containing protein C17D11.16 331 474 - -
Arst3g04051 485 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Arst3g04051 485 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Arst3g04051 485 PRINTS G protein beta WD-40 repeat signature 451 465 IPR020472 -
Arst3g04051 485 MobiDBLite consensus disorder prediction 36 57 - -
Arst3g04051 485 Pfam Anaphase-promoting complex subunit 4 WD40 domain 247 305 IPR024977 -
Arst3g04051 485 Gene3D - 332 481 IPR015943 GO:0005515
Arst3g04051 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 428 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04051 Arst-Chr3 113955762 113961674 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04051 265 464 U-box Gene Family AT2G33340 31.579 5.87e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04051 K14791 - gmx:100807947 700.279