Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04050 ATGGCACCGCGTGACGGCGGCGGAGATGGGACTCGGCCGCCATTGTTGCGGTCTACACGGGGCCGCCATCAGTCCTTGCCGTCGAGGTTCAATGACTCGGTTCTTGATTCATGGAAGAACCAAGGAGTCAAAGTGGAGGACACGGATTCCAGCTTTGAGGATGATGCAGATGAAGAGAAGAAAAAGAAGGGTGATAATTATTGTGCTCTTGAAGTGAATATAGAGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTAACAGTTCTGTCATTCTGTGCTTAGTTTTGAAGGTGGTGTGGAGCAGAAGGTTAAAACTACTGGGAATGGTGGTGAGGAGGAAACAGGTTTACAGGCCGGAGGATTTCGCGTTGGGTGATATAGTTTTGGCGAAGTGTGGGAAAAGGTACCCTGCTTGGCCTGCTGTGGTGATTGATCCTATCTTGCAGGCTCCGAAATCCGTCCTCAGCTGCTGCGTTCTTGGTGCACTCTGCGTCATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTAAAGCAGGGAATGATATTCCCCTTCTCTAAGTTCATGGAAAGATTCCAGGGTCAGACACAGTTGTACAAGAGCAAACCGAGTGACTTTTGCATGGCATTGGAGGAGGCAATGCTGGCTGTAGATGGTCTTCTCAACTCACAGCTGGAAGTAGAGGAAGTAACTTATGTAAATGCTTATCCGTATGGATATTTAGAGCCCCCAGCCATGCCTGTTGATGATGAATACCACTGCGAGGATCAAGATACAATATCTTGTGCTGGCTGTTATTTGATGTTGCCATGCAAAACGATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCAATTTTATTGCAAACATTGCTTTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCACATGGTGGGAATTGGGTGTGCTGTGATCGCTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATATCCATTGAACTTTTCAAGGATCTTGAAAACACAGATTACTATTGCCCAGCGTGCAAGGGAAATTTCAATAAGAAAGTACCCATACCCAAAACAAGCAAGTCAAAAAAGAAGTATAATGTGGAAGACAGATTGGTAGAGAATAGCCAAAAATCTATAGTACCTGAGACGGTAACAGTGGTGTGCAATGACATGGAAGGACTCTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGCTCTTGTGGTTCAAGGAAGCATACACCAAGTGAATGGGAAAGGCACACAGGTAGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAACATGATGCTCCCACTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCACAACAGTTAGATCAGCAGCAGGTGCTTAGCTTTTTGCAAGAAAATTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGCAGATGGGTAGAAGATTGGGAAGATAAAAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACACCAGATGTGGAGAGAGACTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGTGCTTGGTTTCAACCTCAAGTGGTTTTCCAAAATCATGAGGCCATGGAACCTGCGGTAGGAATACTGAGAATTCTTCCTAATACCTTTGTTAAGTATTCCCAAATGTGTGCTTCGAGAGCAGGATATAGCACAGAATTGCATTCTGTGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGAATCTGTATTGGTTGTACATACTCCTGGGGTTTTCTCTCCCAGAGCCTCTCTTGAAAATCATAGAAGATGCTTCCGGGGGTCAAGGCTGGTTTCATCAAAGAATGTAGAGCTTATTCAATCTTCAAACTCTGAAGGTGACAAGATTGAGCCATTTTCTGCTGCAAGATGTCATGTATACTGTAGATCACTGAATAAGAAGGCTGAAATACCAATAATTCACTTGCTGAAGGGACCCGGCCATCATTCTTTAAGTGCAATAACTCAGTTGAACAGCTATAAGGATTCTGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGACTTCATCATTTACAGAAAATGGAAAAGCTTCGAGTTTGCTTTGGAAAATCGGGTATCCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGCATTGAGCGGGTAAGGCGAAGTGTTGCTGATTTAAGGGAAGTGAAATACCGTGCAGAAGGAAAAGATTGCTATCTGTTCAAGATCAGTGAGGATGTGGTAATTGATGCAACGTACAAGGGCAATATAGCACGGCTAATAAACCATTCTTGCATGCCAAATTGTTATGCAAGGATTATGAGTTTGGGTGATCAAGAGAGTCGGATCGTTCTCATTGCCAAGACGAATGTTTCTGCTGGCGAAGAATTAACGTATGATTACTTATTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCTCCAATTGTAGGAAATTTATGAACTAG 2718 0.4246 MAPRDGGGDGTRPPLLRSTRGRHQSLPSRFNDSVLDSWKNQGVKVEDTDSSFEDDADEEKKKKGDNYCALEVNIEMEKNGFVKTESNSSVILCLVLKVVWSRRLKLLGMVVKXRKQVYRPEDFALGDIVLAKCGKRYPAWPAVVIDPILQAPKSVLSCCVLGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSKFMERFQGQTQLYKSKPSDFCMALEEAMLAVDGLLNSQLEVEEVTYVNAYPYGYLEPPAMPVDDEYHCEDQDTISCAGCYLMLPCKTMKKIKDPSGASQFYCKHCFKLRKSKQYCGICKKIWHHSHGGNWVCCDRCNVWVHAECDKISIELFKDLENTDYYCPACKGNFNKKVPIPKTSKSKKKYNVEDRLVENSQKSIVPETVTVVCNDMEGLYFPKLHLIMCKCSSCGSRKHTPSEWERHTGSRAKKWKHSVKVKNMMLPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWEDKKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRILPNTFVKYSQMCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPESVLVVHTPXGVFSPRASLENHRRCFRGSRLVSSKNVELIQSSNSEGDKIEPFSAARCHVYCRSLNKKAEIPIIHLLKGPGHHSLSAITQLNSYKDSEDSKVFTSFKERLHHLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRIERVRRSVADLREVKYRAEGKDCYLFKISEDVVIDATYKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDEQDELKVPCLCKASNCRKFMN 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04050 907 CDD SET_SETD1-like 754 903 - -
Arst3g04050 907 SUPERFAMILY SAND domain-like 394 454 IPR010919 -
Arst3g04050 907 Pfam SET domain 776 881 IPR001214 GO:0005515
Arst3g04050 907 ProSiteProfiles Zinc finger PHD-type profile. 494 545 IPR019787 -
Arst3g04050 907 CDD PHD_TCF19_like 307 357 - -
Arst3g04050 907 SUPERFAMILY SET domain 752 907 IPR046341 -
Arst3g04050 907 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 907 IPR025780 -
Arst3g04050 907 ProSiteProfiles SET domain profile. 765 882 IPR001214 GO:0005515
Arst3g04050 907 MobiDBLite consensus disorder prediction 1 33 - -
Arst3g04050 907 ProSitePatterns Zinc finger PHD-type signature. 497 542 IPR019786 -
Arst3g04050 907 SMART PWWP_4 123 192 IPR000313 -
Arst3g04050 907 Pfam PHD-finger 306 358 IPR019787 -
Arst3g04050 907 Pfam PHD-finger 510 543 - -
Arst3g04050 907 SMART PostSET_3 891 907 IPR003616 -
Arst3g04050 907 PANTHER PHD FINGER PROTEINS 17 360 - -
Arst3g04050 907 SUPERFAMILY FYVE/PHD zinc finger 304 366 IPR011011 -
Arst3g04050 907 Gene3D SET domain 686 907 IPR046341 -
Arst3g04050 907 ProSiteProfiles PWWP domain profile. 137 194 IPR000313 -
Arst3g04050 907 SUPERFAMILY Tudor/PWWP/MBT 117 230 - -
Arst3g04050 907 Pfam SAND domain 394 461 IPR000770 GO:0003677
Arst3g04050 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 364 IPR013083 -
Arst3g04050 907 Gene3D - 113 232 - -
Arst3g04050 907 Gene3D - 388 473 IPR010919 -
Arst3g04050 907 Pfam PHD-zinc-finger like domain 550 620 - -
Arst3g04050 907 CDD PWWP_AtATX3-like 126 226 - -
Arst3g04050 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 547 IPR013083 -
Arst3g04050 907 ProSiteProfiles Extended PHD (ePHD) domain profile. 548 602 IPR034732 -
Arst3g04050 907 SMART PHD_3 306 358 IPR001965 -
Arst3g04050 907 SMART PHD_3 496 543 IPR001965 -
Arst3g04050 907 CDD PHD_ATX3_4_5_like 496 542 IPR042011 -
Arst3g04050 907 SUPERFAMILY FYVE/PHD zinc finger 494 559 IPR011011 -
Arst3g04050 907 ProSiteProfiles Zinc finger PHD-type profile. 304 360 IPR019787 -
Arst3g04050 907 Pfam PWWP domain 126 222 IPR000313 -
Arst3g04050 907 SMART set_7 765 888 IPR001214 GO:0005515
Arst3g04050 907 FunFam Histone-lysine N-methyltransferase 739 907 - -
Arst3g04050 907 ProSiteProfiles Post-SET domain profile. 891 907 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04050 Arst-Chr3 113948071 113955221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04050 263 331 EF-hand Containing Proteins AT5G28340 50.725 1.03e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst3g04050 SET 2.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04050 - - gmx:100793624 1360.9