Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04043 ATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCGATGTTGCTGATGCTCTCGGGAAGGCCGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATAAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAAAAAAAGAAGAAGGGAAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGAAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAGAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGAATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGAATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATTGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1299 0.4357 MDDAGGAVDEVARALDVADALGKADKLDDIALGLKELDMEHYDDEDKGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPEILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLENGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGLMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04043 432 ProSitePatterns Trp-Asp (WD) repeats signature. 353 367 IPR019775 -
Arst3g04043 432 Gene3D - 275 428 IPR015943 GO:0005515
Arst3g04043 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 420 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 326 366 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 125 164 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 187 229 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 371 411 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 276 315 IPR001680 GO:0005515
Arst3g04043 432 SMART WD40_4 232 272 IPR001680 GO:0005515
Arst3g04043 432 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Arst3g04043 432 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Arst3g04043 432 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Arst3g04043 432 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Arst3g04043 432 SUPERFAMILY WD40 repeat-like 147 417 IPR036322 GO:0005515
Arst3g04043 432 FunFam Transducin/WD40 repeat-like superfamily protein 23 277 - -
Arst3g04043 432 Pfam Anaphase-promoting complex subunit 4 WD40 domain 195 253 IPR024977 -
Arst3g04043 432 Gene3D - 36 274 IPR015943 GO:0005515
Arst3g04043 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 375 IPR001680 GO:0005515
Arst3g04043 432 FunFam Putative WD repeat-containing protein C17D11.16 279 421 - -
Arst3g04043 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515
Arst3g04043 432 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 24 426 IPR044285 GO:0006364
Arst3g04043 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 234 - -
Arst3g04043 432 Pfam WD domain, G-beta repeat 330 366 IPR001680 GO:0005515
Arst3g04043 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04043 Arst-Chr3 113835860 113840649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04043 213 411 U-box Gene Family AT2G33340 30.288 1.00e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04043 K14791 - gmx:100807947 650.203