Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04041 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACTGCCGCCAGTGGAGCAGACAGTGAAAATGAGGAAGAAGCAAGTGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCGATGTTGCTGATGCTCTCGGGAAGGCCGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATAAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAAAAAAAGAAGAAGGGAAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGAAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAGAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGAATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGAATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATTGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1449 0.4389 MISAISWIPIGASKAEPTVVEPPSKEEIQDIITAASGADSENEEEASDERMDDAGGAVDEVARALDVADALGKADKLDDIALGLKELDMEHYDDEDKGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPEILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLENGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGLMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04041 482 Gene3D - 327 478 IPR015943 GO:0005515
Arst3g04041 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 421 - -
Arst3g04041 482 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 476 IPR044285 GO:0006364
Arst3g04041 482 SUPERFAMILY WD40 repeat-like 197 467 IPR036322 GO:0005515
Arst3g04041 482 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Arst3g04041 482 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Arst3g04041 482 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Arst3g04041 482 Gene3D - 84 326 IPR015943 GO:0005515
Arst3g04041 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 470 IPR001680 GO:0005515
Arst3g04041 482 FunFam Transducin/WD40 repeat-like superfamily protein 73 327 - -
Arst3g04041 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 288 IPR001680 GO:0005515
Arst3g04041 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 284 - -
Arst3g04041 482 MobiDBLite consensus disorder prediction 34 57 - -
Arst3g04041 482 ProSitePatterns Trp-Asp (WD) repeats signature. 403 417 IPR019775 -
Arst3g04041 482 SMART WD40_4 282 322 IPR001680 GO:0005515
Arst3g04041 482 SMART WD40_4 376 416 IPR001680 GO:0005515
Arst3g04041 482 SMART WD40_4 175 214 IPR001680 GO:0005515
Arst3g04041 482 SMART WD40_4 421 461 IPR001680 GO:0005515
Arst3g04041 482 SMART WD40_4 237 279 IPR001680 GO:0005515
Arst3g04041 482 SMART WD40_4 326 365 IPR001680 GO:0005515
Arst3g04041 482 Pfam WD domain, G-beta repeat 380 416 IPR001680 GO:0005515
Arst3g04041 482 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Arst3g04041 482 Pfam Anaphase-promoting complex subunit 4 WD40 domain 245 303 IPR024977 -
Arst3g04041 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 425 IPR001680 GO:0005515
Arst3g04041 482 FunFam Putative WD repeat-containing protein C17D11.16 329 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04041 Arst-Chr3 113835860 113840650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04041 263 461 U-box Gene Family AT2G33340 30.288 9.23e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04041 K14791 - gmx:100807947 688.723