Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04040 ATGCTAAGAATGGGATCAATGAATAGCAAGGAGCAAATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACTGCCGCCAGTGGAGCAGACAGTGAAAATGAGGAAGAAGCAAGTGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCGATGTTGCTGATGCTCTCGGGAAGGCCGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATAAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAAAAAAAGAAGAAGGGAAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGAAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAGAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGAATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGAATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATTGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1485 0.4377 MLRMGSMNSKEQMISAISWIPIGASKAEPTVVEPPSKEEIQDIITAASGADSENEEEASDERMDDAGGAVDEVARALDVADALGKADKLDDIALGLKELDMEHYDDEDKGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPEILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLENGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGLMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04040 494 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 10 488 IPR044285 GO:0006364
Arst3g04040 494 Pfam Anaphase-promoting complex subunit 4 WD40 domain 257 315 IPR024977 -
Arst3g04040 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 437 IPR001680 GO:0005515
Arst3g04040 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 300 IPR001680 GO:0005515
Arst3g04040 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 296 - -
Arst3g04040 494 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Arst3g04040 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 433 - -
Arst3g04040 494 SUPERFAMILY WD40 repeat-like 209 479 IPR036322 GO:0005515
Arst3g04040 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 482 IPR001680 GO:0005515
Arst3g04040 494 Gene3D - 339 490 IPR015943 GO:0005515
Arst3g04040 494 FunFam Putative WD repeat-containing protein C17D11.16 341 483 - -
Arst3g04040 494 ProSitePatterns Trp-Asp (WD) repeats signature. 415 429 IPR019775 -
Arst3g04040 494 SMART WD40_4 294 334 IPR001680 GO:0005515
Arst3g04040 494 SMART WD40_4 388 428 IPR001680 GO:0005515
Arst3g04040 494 SMART WD40_4 187 226 IPR001680 GO:0005515
Arst3g04040 494 SMART WD40_4 249 291 IPR001680 GO:0005515
Arst3g04040 494 SMART WD40_4 433 473 IPR001680 GO:0005515
Arst3g04040 494 SMART WD40_4 338 377 IPR001680 GO:0005515
Arst3g04040 494 FunFam Transducin/WD40 repeat-like superfamily protein 85 339 - -
Arst3g04040 494 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Arst3g04040 494 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Arst3g04040 494 PRINTS G protein beta WD-40 repeat signature 460 474 IPR020472 -
Arst3g04040 494 Gene3D - 96 336 IPR015943 GO:0005515
Arst3g04040 494 MobiDBLite consensus disorder prediction 46 66 - -
Arst3g04040 494 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04040 Arst-Chr3 113835860 113840651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04040 275 473 U-box Gene Family AT2G33340 30.288 8.03e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04040 K14791 - gmx:100807947 688.723