Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04026 ATGGTGAGAGACGATTTATACATAACGGTTCCGAGCTTCTTCCGGTGCCCTATATCACTGGACGTCATGAAGTCCCCCGTCAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTACATACCAAGGAATTCGTTCCCAACCGCACCCTGCAGAGGCTCATCCAGATCTGGTCCGAATCCCTCCGCAACTCTCCTGACTCACCCGACCCTGCCGACTCTCTCCTTTCCAAAGATCAGGTCCTAGCCGCCTTCGCCCACTTGCAGTCCCGCCCCCTCGACCGCCTCGAATCGCTCGCCAAAATCCTCAGTTTCGCGCGAGATTCTGAGGAAAACCGCAAGTATCTTGCGAGAATAGAAGCGTTCCTGCCTGCGCTGGTCGGTTTCCTCCTCAATGTTGACGACGATTTTCAGTTCCTTGAGCAGGTTGTTATGGCGTTGAATCTGATTCTGGATAAAATCCAAGACCGCGAGGCCTTGAAAACCTTGATGCTCAAGAACCAGAGCAGCAATAGCAGCAGCTGCTTGGATTCTCTGCTCCTCGTTCTGCAACGAGGAAGCACCGATTCGAAGATCTCCTCGGCTACGGTTTTGCAATCACTCGCCATGGATACGGAATCGAAGCTCTTGATAGGGGAAAAGAAAGGCCTAATTTCCCAAGTGCTCAGGCTAACCGCGCCGGACAAAGATCCAGCGGTGATCGAGAACGCCTTGTCGTGCCTTGTGGCAATCTCCACGGCAAAAAGAAATAAGTTGATGCTGGTGCATCTTGGAGCAGTGAAAGCGTTCTCGAAGCTTCTAACGGAATCGAGCGTGAGCGCCTCGGTGGCGGAGAAGGTGCTGAAGCTTCTGGAAACGGTGTCGTCAACGAAGGAAGGGAGAACGGAGATATGCGAGGACAGCACGTGCGTGGCGGCGATACTGAGCAAGGTTCTGAAGGTTTCGAGCGCGGCGACGGAACACGCCGTGACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGACCAGAAGGCGCAAGAAGCGGTTACGAAGGCTAACGGCTTAACGAAGATTCTGTTACTGATGCAGAGCAATTGTTCGCCTCCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTTAGAGTAAATTCCAAATCGTGTCTTTCTTGTTATGACACCAAAACTACCCATATCATGCCCTTTTGA 1242 0.5322 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNRTLQRLIQIWSESLRNSPDSPDPADSLLSKDQVLAAFAHLQSRPLDRLESLAKILSFARDSEENRKYLARIEAFLPALVGFLLNVDDDFQFLEQVVMALNLILDKIQDREALKTLMLKNQSSNSSSCLDSLLLVLQRGSTDSKISSATVLQSLAMDTESKLLIGEKKGLISQVLRLTAPDKDPAVIENALSCLVAISTAKRNKLMLVHLGAVKAFSKLLTESSVSASVAEKVLKLLETVSSTKEGRTEICEDSTCVAAILSKVLKVSSAATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04026 413 SMART arm_5 264 307 IPR000225 GO:0005515
Arst3g04026 413 SMART arm_5 127 170 IPR000225 GO:0005515
Arst3g04026 413 SMART arm_5 353 394 IPR000225 GO:0005515
Arst3g04026 413 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Arst3g04026 413 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Arst3g04026 413 PANTHER WDSAM1 PROTEIN 9 401 IPR045185 GO:0061630
Arst3g04026 413 Gene3D - 85 408 IPR011989 -
Arst3g04026 413 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Arst3g04026 413 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Arst3g04026 413 CDD RING-Ubox_PUB 11 63 IPR045210 -
Arst3g04026 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Arst3g04026 413 SUPERFAMILY ARM repeat 191 399 IPR016024 -
Arst3g04026 413 SUPERFAMILY RING/U-box 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04026 Arst-Chr3 113579617 113581482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04026 1 413 U-box Gene Family AT5G09800 53.095 5.10e-144 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04026 3 113579617 113581482 Arst3g04026 3 113579617 113581482 ECH
Arst3g04026 3 113579617 113581482 Arst3g04026 3 113579617 113581482 PCT