Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04020 ATGAGTGAACCTGGCAGAAAGCACTCTTCAAGGAGGGATTTGAGAGATGATGCTGAATTTGCAAGAAGTAGCCGGAGTAGGAGCCCTGCATGCGATTTCAGGTGGGATTCAGAAGCCAGTGACAGAAAAAGAATGAGGTCTGGAGGATCAACACGACCATGTAGAGATTTCGCTGTTGGAAACTGCAGAAGAGGCAGCCATTGCCATTTCCTTCATGATGATAATCAAAACTATGATGATGGCTGGGAAAGTAGAAGCAGGCAAGACAGAGCTCTCAGATATTCTGCACCCCATGAGGGTGGGGACTATTCTCTTAGAAGTGGAAGATCTAATGATGCTTGTATTAATTTTGCAAAAGGATGGTGTAGAATGGGAGCATCATGCAAGTATGTACATCATCACAACAATTCTGATGGGTTTCGTGAAATTTCCGTTGCAGAATCAACTAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGTGGGATGGTGCGCATCGTCCAAATCACAGTGGGGATATTCCTTGCAAATTTTTTGCTTTTGGCAATTGTCGAAACGGTAAAAATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGGCCTAACAGAAGTTTAAGGGATGATAGGACGAGTTATTATGGTGAACATGAGGCATTGGATATACAAAAATTGAATGATTCGATTAGTCCGAATGGAAGGCTAAGGGATGACAGATGTGGTTTCAAAAGCAACATGGCTGATGTAGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTGGGTGCTGTCGTTGATACAGAAAACCTGGTTGAGGACAACACAAACAGAATTTCAGGTGCCACAGAGCCGAGTTTCACTCATCGGCCAATGAATGATGTATTGGACTGCCGTTTAGATAAGGGCAGAGTGCATGCTCAATCACCGTTTCCAAGTGCGAAGAACGATACCAACTATTGGGAGACACAAAAGGCTGGAGACAACATGCGCAGTACCCAGTCAATAAATACAGTGATTTGGCCAGGTGATGAAAAAATGTCTCCCGATTGGAAGTTTGGTGTGGGATCTTTCTGCGGAACTGAAGAGAAGCATGAGCAGAATAAACAAGAAGTTACTCCAGGACAAAGATTTAATCAGAATGCTCAGGATCTAAATGCTTCAAGCTGTCAGGTTGTTGGTCAAAGTCAAATGCCAGTTTCCGTTGCTGCTTCAAGAGTGGGAATTGTAGAAGGTATGCAGAACCAGGAAATCAATGTGGAGAAAAAGTACACTGCTGAGCCAAACATCATGGAGGCGATTCTATCACAAATTAGTTCAAGAGATCCTTTATCTCAGAACATGGTTAGCAAAGAACGGCTTGCTCAACTAACCAGCATCTCAGCCACTCTGGCACATATCATTGGTTCAGCTAAGCAGCTTCCACAACTTAATGCTACTTCAAATTCTCATGATGCAAGGGATACTCCTTTACTAGGCAAATCTGAAGGGTCTTATTCTAATAATAAGCCAGTTTTTACGTTCGCCAAGTCAGATCCTGCCGTTGGATCACAGAAGCAGTATGATCCAATTTGTGACAGTATTGAAACTAAGGATGCTCATGCAAATGGCGTCCCGCCATACTTTTCCCCAATTGTAAAAATTATAAATGAAGCGGAAGAAATTCCAGCACCATCATCTAAGTCAACAAGACAAAATCTTGATTATTCTCGTAAAACTGCCTTTCCAGAAGGACCACTTGTTAAGTGTGACCACTCTATTCAGTTGCAGCAGCAAGGTGAAAATATTGAGATTAATAAGGAGAAAGATGTAGTGATAGCTGAAGAAAAGCAAAGTTTACAATGTGCTAAAGAAATCACGAAAGAGAATATTCCTATGGAAAACATGGATCAAACTGGTGGAACTGATGAAGCCAAGAAAACAAAGGATGTTAAAGGGGTTCGTGCATTTAAATATTCATTGGTGGAGTTTGTTAAGGAGCTGCTAAAACCAACATGGAAAGAAGGCCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAAGTAGTTGGCACGGTGCAGCGGGCACATATTCCTCAAACGCAAGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTACAGGCATATGTAGAAAAGGCACAGAAGGCATAG 2193 0.4163 MSEPGRKHSSRRDLRDDAEFARSSRSRSPACDFRWDSEASDRKRMRSGGSTRPCRDFAVGNCRRGSHCHFLHDDNQNYDDGWESRSRQDRALRYSAPHEGGDYSLRSGRSNDACINFAKGWCRMGASCKYVHHHNNSDGFREISVAESTREREIDRRHMESSYEWDGAHRPNHSGDIPCKFFAFGNCRNGKNCRFSHDSQAFQRPNRSLRDDRTSYYGEHEALDIQKLNDSISPNGRLRDDRCGFKSNMADVDEAWDGPEKNDLGAVVDTENLVEDNTNRISGATEPSFTHRPMNDVLDCRLDKGRVHAQSPFPSAKNDTNYWETQKAGDNMRSTQSINTVIWPGDEKMSPDWKFGVGSFCGTEEKHEQNKQEVTPGQRFNQNAQDLNASSCQVVGQSQMPVSVAASRVGIVEGMQNQEINVEKKYTAEPNIMEAILSQISSRDPLSQNMVSKERLAQLTSISATLAHIIGSAKQLPQLNATSNSHDARDTPLLGKSEGSYSNNKPVFTFAKSDPAVGSQKQYDPICDSIETKDAHANGVPPYFSPIVKIINEAEEIPAPSSKSTRQNLDYSRKTAFPEGPLVKCDHSIQLQQQGENIEINKEKDVVIAEEKQSLQCAKEITKENIPMENMDQTGGTDEAKKTKDVKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04020 730 SMART c3hfinal6 173 199 IPR000571 GO:0046872
Arst3g04020 730 SMART c3hfinal6 50 74 IPR000571 GO:0046872
Arst3g04020 730 SMART c3hfinal6 109 134 IPR000571 GO:0046872
Arst3g04020 730 SUPERFAMILY CCCH zinc finger 176 198 IPR036855 GO:0046872
Arst3g04020 730 Gene3D - 48 138 - -
Arst3g04020 730 ProSiteProfiles Zinc finger C3H1-type profile. 178 200 IPR000571 GO:0046872
Arst3g04020 730 Gene3D - 153 207 - -
Arst3g04020 730 ProSiteProfiles Zinc finger C3H1-type profile. 48 75 IPR000571 GO:0046872
Arst3g04020 730 MobiDBLite consensus disorder prediction 1 51 - -
Arst3g04020 730 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 9 728 - -
Arst3g04020 730 Pfam RNA-binding, Nab2-type zinc finger 113 132 - -
Arst3g04020 730 ProSiteProfiles Zinc finger C3H1-type profile. 108 135 IPR000571 GO:0046872
Arst3g04020 730 Pfam CCCH-type zinc finger 178 198 IPR041367 -
Arst3g04020 730 MobiDBLite consensus disorder prediction 481 500 - -
Arst3g04020 730 MobiDBLite consensus disorder prediction 1 50 - -
Arst3g04020 730 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04020 Arst-Chr3 113175991 113181833 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst3g04020 zf-CCCH 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04020 - K22909 gmx:100783856 774.237