Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04019 ATGAGTGAACCTGGCAGAAAGCACTCTTCAAGGAGGGATTTGAGAGATGATGCTGAATTTGCAAGAAGTAGCCGGAGTAGGAGCCCTGCATGCGATTTCAGGTGGGATTCAGAAGCCAGTGACAGAAAAAGAATGAGGTCTGGAGGATCAACACGACCATGTAGAGATTTCGCTGTTGGAAACTGCAGAAGAGGCAGCCATTGCCATTTCCTTCATGATGATAATCAAAACTATGATGATGGCTGGGAAAGTAGAAGCAGGCAAGACAGAGCTCTCAGATATTCTGCACCCCATGAGGAATCAACTAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGTGGGATGGTGCGCATCGTCCAAATCACAGTGGGGATATTCCTTGCAAATTTTTTGCTTTTGGCAATTGTCGAAACGGTAAAAATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGGCCTAACAGAAGTTTAAGGGATGATAGGACGAGTTATTATGGTGAACATGAGGCATTGGATATACAAAAATTGAATGATTCGATTAGTCCGAATGGAAGGCTAAGGGATGACAGATGTGGTTTCAAAAGCAACATGGCTGATGTAGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTGGGTGCTGTCGTTGATACAGAAAACCTGGTTGAGGACAACACAAACAGAATTTCAGGTGCCACAGAGCCGAGTTTCACTCATCGGCCAATGAATGATGTATTGGACTGCCGTTTAGATAAGGGCAGAGTGCATGCTCAATCACCGTTTCCAAGTGCGAAGAACGATACCAACTATTGGGAGACACAAAAGGCTGGAGACAACATGCGCAGTACCCAGTCAATAAATACAGTGATTTGGCCAGGTGATGAAAAAATGTCTCCCGATTGGAAGTTTGGTGTGGGATCTTTCTGCGGAACTGAAGAGAAGCATGAGCAGAATAAACAAGAAGTTACTCCAGGACAAAGATTTAATCAGAATGCTCAGGATCTAAATGCTTCAAGCTGTCAGGTTGTTGGTCAAAGTCAAATGCCAGTTTCCGTTGCTGCTTCAAGAGTGGGAATTGTAGAAGGTATGCAGAACCAGGAAATCAATGTGGAGAAAAAGTACACTGCTGAGCCAAACATCATGGAGGCGATTCTATCACAAATTAGTTCAAGAGATCCTTTATCTCAGAACATGGTTAGCAAAGAACGGCTTGCTCAACTAACCAGCATCTCAGCCACTCTGGCACATATCATTGGTTCAGCTAAGCAGCTTCCACAACTTAATGCTACTTCAAATTCTCATGATGCAAGGGATACTCCTTTACTAGGCAAATCTGAAGGGTCTTATTCTAATAATAAGCCAGTTTTTACGTTCGCCAAGTCAGATCCTGCCGTTGGATCACAGAAGCAGTATGATCCAATTTGTGACAGTATTGAAACTAAGGATGCTCATGCAAATGGCGTCCCGCCATACTTTTCCCCAATTGTAAAAATTATAAATGAAGCGGAAGAAATTCCAGCACCATCATCTAAGTCAACAAGACAAAATCTTGATTATTCTCGTAAAACTGCCTTTCCAGAAGGACCACTTGTTAAGTGTGACCACTCTATTCAGTTGCAGCAGCAAGGTGAAAATATTGAGATTAATAAGGAGAAAGATGTAGTGATAGCTGAAGAAAAGCAAAGTTTACAATGTGCTAAAGAAATCACGAAAGAGAATATTCCTATGGAAAACATGGATCAAACTGGTGGAACTGATGAAGCCAAGAAAACAAAGGATGTTAAAGGGGTTCGTGCATTTAAATATTCATTGGTGGAGTTTGTTAAGGAGCTGCTAAAACCAACATGGAAAGAAGGCCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCTGATAAAGTAGTTGGCACGGTGCAGCGGGCACATATTCCTCAAACGCAAGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTACAGGCATATGTAGAAAAGGCACAGAAGGCATAG 2052 0.4181 MSEPGRKHSSRRDLRDDAEFARSSRSRSPACDFRWDSEASDRKRMRSGGSTRPCRDFAVGNCRRGSHCHFLHDDNQNYDDGWESRSRQDRALRYSAPHEESTREREIDRRHMESSYEWDGAHRPNHSGDIPCKFFAFGNCRNGKNCRFSHDSQAFQRPNRSLRDDRTSYYGEHEALDIQKLNDSISPNGRLRDDRCGFKSNMADVDEAWDGPEKNDLGAVVDTENLVEDNTNRISGATEPSFTHRPMNDVLDCRLDKGRVHAQSPFPSAKNDTNYWETQKAGDNMRSTQSINTVIWPGDEKMSPDWKFGVGSFCGTEEKHEQNKQEVTPGQRFNQNAQDLNASSCQVVGQSQMPVSVAASRVGIVEGMQNQEINVEKKYTAEPNIMEAILSQISSRDPLSQNMVSKERLAQLTSISATLAHIIGSAKQLPQLNATSNSHDARDTPLLGKSEGSYSNNKPVFTFAKSDPAVGSQKQYDPICDSIETKDAHANGVPPYFSPIVKIINEAEEIPAPSSKSTRQNLDYSRKTAFPEGPLVKCDHSIQLQQQGENIEINKEKDVVIAEEKQSLQCAKEITKENIPMENMDQTGGTDEAKKTKDVKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04019 683 Gene3D - 18 90 - -
Arst3g04019 683 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Arst3g04019 683 SMART c3hfinal6 50 74 IPR000571 GO:0046872
Arst3g04019 683 ProSiteProfiles Zinc finger C3H1-type profile. 131 153 IPR000571 GO:0046872
Arst3g04019 683 MobiDBLite consensus disorder prediction 1 52 - -
Arst3g04019 683 SUPERFAMILY CCCH zinc finger 129 151 IPR036855 GO:0046872
Arst3g04019 683 Gene3D - 94 160 - -
Arst3g04019 683 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 73 IPR000571 GO:0046872
Arst3g04019 683 MobiDBLite consensus disorder prediction 1 50 - -
Arst3g04019 683 Pfam CCCH-type zinc finger 131 151 IPR041367 -
Arst3g04019 683 ProSiteProfiles Zinc finger C3H1-type profile. 48 75 IPR000571 GO:0046872
Arst3g04019 683 MobiDBLite consensus disorder prediction 434 453 - -
Arst3g04019 683 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 9 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04019 Arst-Chr3 113175991 113181833 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst3g04019 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04019 - K22909 ahf:112733112 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04019 3 113175991 113181833 Arst3g04019 3 113175991 113181833 ECH