Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g04017 ATGGATACCACAAACCTGCAGCAGAATAATAATGCTAGTGTCTTCACTGCTGCTACTTGGACAGAAGCTGATCATAATCACATCGTTCACCAAATCCCTAACATCATGGCTTCTGGGGTTTTCCCAAACTACCATCACCTTCTTCAAATTCATCATCATCCCTCAACAACCACTACTGCACTGCCCTCTTCTTCTTCGTCGGGGTTCCTTGGTGACATACTTGGAGTAGTGCACCAAGAACAAGAACAAGATCATGATCACGATCATGAAGATGAAGAGCCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGATCCCGCCACCATTCGGAAGCCAAAGAGGCGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTAGCGGCGCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTGCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACAGCTTCCATGCTGGATGAAGCAATTCGCTATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCACTACTCCTCATCAACCGCCACAATGCAATTATGTTGGTCTTCCAAATAATCCTAACAGTGCCTTTTCTTTAGGCCCTTCTACTTCTGATTGGCCTTTTGCACCCACCACCACGCCCTCCGCCGTGCCTGCCTCATTCGGATTCAATGCCGGAGGAGGTCATCATGCCCCCTCTAGCTTTAATCATCATGAGGTAATTAATGAATGA 774 0.4884 MDTTNLQQNNNASVFTAATWTEADHNHIVHQIPNIMASGVFPNYHHLLQIHHHPSTTTTALPSSSSSGFLGDILGVVHQEQEQDHDHDHEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPHQPPQCNYVGLPNNPNSAFSLGPSTSDWPFAPTTTPSAVPASFGFNAGGGHHAPSSFNHHEVINE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g04017 257 CDD bHLH_AtIND_like 132 189 - -
Arst3g04017 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 198 IPR036638 GO:0046983
Arst3g04017 257 Gene3D - 134 195 IPR036638 GO:0046983
Arst3g04017 257 SMART finulus 137 186 IPR011598 GO:0046983
Arst3g04017 257 FunFam BHLH transcription factor 134 197 - -
Arst3g04017 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 217 IPR045843 GO:0003700|GO:0006355
Arst3g04017 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Arst3g04017 257 Pfam Helix-loop-helix DNA-binding domain 141 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g04017 Arst-Chr3 113123776 113124549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g04017 98 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.899 1.79e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g04017 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g04017 - - adu:107480233 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g04017 3 113123776 113124549 Arst3g04017 3 113123776 113124549 ECH
Arst3g04017 3 113123776 113124549 Arst3g04017 3 113123776 113124549 PCT