Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03993 ATGAGTGAACCTGAAATGACCATTCCACACTTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACGGGTCAAACCTATGACAGATCAAGCATAGAGAAATGGTTAGGTACAGGTAACCTGATATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAATCACACCCTCCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCTCAATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTAGCTGCTTTGAAACACACCCTTCAATCTCAAGAGGATGATACCTTAGAGAACAAGCTCCAAGTACTTGAGAAAATCAATGTCTTCTTTTCTGGTGAGTATAGTTCTTTCAGCAGATCATGTTTCGTACAACTTGGTCTTTTGCCTCTGCTCCTGGAACTAGTTTTTGGAGGAGGAACAATAGAAGAATCTCATGTTGTATCAAATAATGATCACATGAAATTTATAGAGATTGCACTTGGTTGCATTGTGAAACTGCTGCATCTTGGTTATGATTTGGAGGCTCTAAATATTATCAAAGATGATGAGTCTAAATTAGCAACATTTGTGGTGTTATTTGAAAAAGGCACAATTACTGTTAAATCTAGCTTGTGTCATATTATAGAGTCAGCATCATCATCTGAGACAACACAAGAGTTATGTTATGTTTTCGGAAACACTCAGAAACTAGTGCATGAGATTGTTTTAGTACTTGTTCAAAATTGTGATGCTTCTGAGGATGCAGTTAAGGCCATTTTAGCACTGTGTTCATTGAATTCCAACAGAGAGAGTTTGGTGAGAGAAGGAGCAATAGAAGGGATCATAACATACATTTCAATGATTTCATCATCATCAGGTAATGAAATTACTCAAATTAGAGGACAAAACAAGAAACTTGTGACTTCAATAGCAATGGGAATAGTAGTAAAACTATTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAGTCACCCAAACGGGGTTGATACTTTGGTGAAGTTGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGATAGTGCTGTTGAGGCACTTTCCATTGTTTGTGGAGATTATATGAGTGCAAGAGAACAAGCCATTGGTGCTGGGGTTATGACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGACCAGAATGCTCCTCAAATTGCTCAAATCCAAGTGGATTCAGGTGCCAAAGTAG 1257 0.3962 MSEPEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGTGNLICPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPQFHPGNSATIDSLAALKHTLQSQEDDTLENKLQVLEKINVFFSGEYSSFSRSCFVQLGLLPLLLELVFGGGTIEESHVVSNNDHMKFIEIALGCIVKLLHLGYDLEALNIIKDDESKLATFVVLFEKGTITVKSSLCHIIESASSSETTQELCYVFGNTQKLVHEIVLVLVQNCDASEDAVKAILALCSLNSNRESLVREGAIEGIITYISMISSSSGNEITQIRGQNKKLVTSIAMGIVVKLLELESGRETLVSHPNGVDTLVKLVFSVKCDQDCSDSAVEALSIVCGDYMSAREQAIGAGVMTKLLLLMQSHCATTTKSKTRMLLKLLKSKWIQVPK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03993 418 Gene3D - 192 413 IPR011989 -
Arst3g03993 418 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Arst3g03993 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Arst3g03993 418 SUPERFAMILY ARM repeat 94 398 IPR016024 -
Arst3g03993 418 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Arst3g03993 418 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Arst3g03993 418 CDD RING-Ubox_PUB 9 56 IPR045210 -
Arst3g03993 418 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Arst3g03993 418 PANTHER WDSAM1 PROTEIN 5 415 IPR045185 GO:0061630
Arst3g03993 418 SUPERFAMILY RING/U-box 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03993 Arst-Chr3 112399733 112401377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03993 8 413 U-box Gene Family AT3G19380 28.810 1.69e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03993 - - adu:107479288 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03993 3 112399733 112401377 Arst3g03993 3 112399733 112401377 ECH