Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03989 TATCCTCCTGGGTTTTGCTTCTCTCCAACAGATGAAGAACTCATCCTTCACTTTCTTTATTCCAGAATTTCTCTACCATTCCATCCCAGCATCATACCGGACCTTGATCCCTCTCAACTTCATCCATGTCAATTAAATGGTAAGGCGTTTTCAAGTGGGAATCAACACTATTTCTTCACCAATAAAGTGAAGGAAAACAGAAGCACAGAAAATGGGTATTGGAAGGAAATAGGTTTGAGCGAACCTATAATCTCAGCTGATGCAAACAAGAAATTGGGAATCAAGAAGTATTTTGTCTTCACTCTTAATGAAGGCACAGAAACCAATTGGGTCATGCAGGAATACCATATTTCCTCATCTATGTTCCACAACCCTATTTCATGTTATGCAAATGGAACTGCTCACCGAAGATTATTAAGACCTGATCAAAATCAGAACAATAAATGGGTTTTGTGCAGAGTGTATGAGAAGAACAAGTCACAATCACAACAAGGTGCAACTGCAAACTCCTACTATAGCGACGAGGATGATTGTGGATCAGAACTTTCATATCTAGATGAGGTTTATCTGTCACTTGATGATGATCTTGAAGTCATAAGCCCCCCTAATTAA 612 0.3905 YPPGFCFSPTDEELILHFLYSRISLPFHPSIIPDLDPSQLHPCQLNGKAFSSGNQHYFFTNKVKENRSTENGYWKEIGLSEPIISADANKKLGIKKYFVFTLNEGTETNWVMQEYHISSSMFHNPISCYANGTAHRRLLRPDQNQNNKWVLCRVYEKNKSQSQQGATANSYYSDEDDCGSELSYLDEVYLSLDDDLEVISPPN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03989 203 PANTHER NAC TRANSCRIPTION FACTOR 56 2 170 - -
Arst3g03989 203 Gene3D NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Arst3g03989 203 SUPERFAMILY NAC domain 2 157 IPR036093 GO:0003677|GO:0006355
Arst3g03989 203 Pfam No apical meristem (NAM) protein 2 117 IPR003441 GO:0003677|GO:0006355
Arst3g03989 203 ProSiteProfiles NAC domain profile. 1 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03989 Arst-Chr3 112309029 112310020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03989 2 161 NAC Transcription Factor Family AT1G61110 36.842 7.01e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g03989 NAM 7.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03989 - - aip:107634622 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03989 3 112309029 112310020 Arst3g03989 3 112309029 112310020 ECH