Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03969 ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCGATGAGCCTTAACGACTCTCATTATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAAACCCTCTCCCTCTCCCTCTGCCTCCGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCTGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTCGGAGGAGAAACCCTCTTCCATCGAGGTCAAACCTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATTGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGCAGGATCCGAGTAACGACCAGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGTTTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGATTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGATTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAGAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACAGTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGTAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGATATATTGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGCTCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3060 0.4307 MERSVSRTHKKPMSLNDSHYRFLQDLSAHPKSKPSPSPSASEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDSEEKPSSIEVKPPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDCDKEAAVDESRFDELIELDSPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNDQSQGAKYAVGDAGIEYVEDDDSPAKFAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPREGFDVSVTQRQLDEEHDGQHTVNDTFKAHIEFLSSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTRYIGTSVSSSSNDRMADGAEFAFKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRLSQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03969 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 546 IPR027417 -
Arst3g03969 1019 Coils Coil 170 190 - -
Arst3g03969 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 864 IPR027417 -
Arst3g03969 1019 Gene3D - 568 865 IPR027417 -
Arst3g03969 1019 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 496 IPR014001 -
Arst3g03969 1019 FunFam Protein CHROMATIN REMODELING 24 288 566 - -
Arst3g03969 1019 Pfam Helicase conserved C-terminal domain 668 780 IPR001650 -
Arst3g03969 1019 SMART helicmild6 697 780 IPR001650 -
Arst3g03969 1019 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 671 830 IPR001650 -
Arst3g03969 1019 Coils Coil 979 999 - -
Arst3g03969 1019 PANTHER SNF2/RAD54 FAMILY MEMBER 105 995 - -
Arst3g03969 1019 SMART ultradead3 304 507 IPR014001 -
Arst3g03969 1019 CDD SF2_C_SNF 663 791 - -
Arst3g03969 1019 MobiDBLite consensus disorder prediction 1 16 - -
Arst3g03969 1019 Gene3D - 294 567 IPR038718 -
Arst3g03969 1019 MobiDBLite consensus disorder prediction 1 109 - -
Arst3g03969 1019 MobiDBLite consensus disorder prediction 38 53 - -
Arst3g03969 1019 MobiDBLite consensus disorder prediction 218 236 - -
Arst3g03969 1019 MobiDBLite consensus disorder prediction 935 954 - -
Arst3g03969 1019 Pfam SNF2-related domain 324 616 IPR000330 GO:0005524|GO:0140658
Arst3g03969 1019 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03969 Arst-Chr3 111880557 111886832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03969 309 834 RAD5 or RAD16-like Gene Family AT1G02670 24.653 8.34e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst3g03969 SNF2_N 2.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03969 K20093 - gmx:100779283 1410.59