Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03942 ATGGGCAAAGAAAATGGGTCAGCAACGCCGAAGGAAGAAGGCAGTGATGACGGTTACTCAAGTCTTGAGACTGTTGAATTAGAATCTCAGTCACGACCTAGCTTAGAGAAGGACACAGGTTTGCCAAGTTGTCGCGTGTGCCAATGTGCCGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGCATCACTCCGGTGATCAAAGCTTGTAAATGGAATGGGGAAGATGGGGAGGTAAGATCAGAAGGCCAGGGAATTCAGAAAAATATGTCTTTTAACAAAAATGTTGGAAACAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGAATCTCTGACTTCAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTCATGTTCATGCGAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAGCGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCCGACACAGTTTCACAGGTGGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCTTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCCCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTCCGCTTTTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTTGCAATATGGGCTTCACGGACACATGGTGCCCATACAACGTGA 1098 0.449 MGKENGSATPKEEGSDDGYSSLETVELESQSRPSLEKDTGLPSCRVCQCAESDKRGDAALEFLGITPVIKACKWNGEDGEVRSEGQGIQKNMSFNKNVGNKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPHVHANNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGLAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFAIWASRTHGAHTT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03942 365 SMART ringv_2 117 166 IPR011016 GO:0008270
Arst3g03942 365 PANTHER ZINC FINGER, RING-CH-TYPE 20 332 - -
Arst3g03942 365 Pfam RING-variant domain 131 165 IPR011016 GO:0008270
Arst3g03942 365 MobiDBLite consensus disorder prediction 22 37 - -
Arst3g03942 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 175 IPR013083 -
Arst3g03942 365 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Arst3g03942 365 MobiDBLite consensus disorder prediction 1 41 - -
Arst3g03942 365 SUPERFAMILY RING/U-box 128 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03942 Arst-Chr3 111486437 111490351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03942 1 355 C3H Transcription Factor Family AT5G08750 63.736 5.72e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03942 - - gmx:100805323 538.88