Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03907 ATGCCTCTTCTGAGGAGAAAGCCTTTTTCCTTGGCTGATCCACCTAAGGACTTGAAGCCAGATGAGCATGTTTATCAAATTCGATTTACAAAGGAAATATTTCGAGATTATAACGATTATTTGAACCGTATAAATCTATATCGCCAGAGGATTTGGATGTGTAAAGTAACTGGAAAAACCAACTTGACTTATGAAGAGGCTTTGGTGTCAGAAAAAAGTGCCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGTGTTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTTCATTGCTGAAAAATTGGAAGGACGTTTTTTTGTGGGTGCTGAACTCCATGGGAAGAAGGACAATGAGTTATACCCCTGCAGAATATTAAAAGTCATCCCGAAAGGAGTTGACAAATTTTATTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGAAGAAGTCAATGCAAAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGTCTTTTATCCGGGAATCGACATATAGGAATGCTCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATGGAATCTCAACTGACATACCCGAGGAGTTAAGAGGAAGAGTTTGCTTCAAGAATGGACTTCTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCACTGGCTGAAACTGAAAACTGTAAACGGAAGAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGAGCAGCAAGAAAATGGTCAGCACAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACATGATCCTGTTTTGGCTAATCGCCCTTCTCCATCAAGAGACTTCAATGTCCCCATGAACTGTGTAGGAAATCTCTTAATGGTTTGGGATTTTTGTACCACTTTTGGGAAAGTGTTGCACTTGTTGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAATATTGTTCTCCTTGTGGAGTCACATGCAGCTCTTTTTCGGGTTCTTATACAAGATGATAGTGAATACACTGAAGCAGTGAAAAACCGAAGGACGAAGTCCAAGATTACAATGGTTAACTGGACAGAATATCTATGTCATTTTCTAGAAATGATCAATGTTCCTGAATTGCGGCAATGTGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGCTAAATTGGAAATCCTATATGAATTGGTCAATCGAGTGATTGAAACAACAATTTTTAGAGAGAAGTTGGGTGAGATTATTGAACAGCGGCATGTGCTTGGGGTGTCTAGGAGGGAAGAAGTGCTGGAAGATGCTAGGAAGAGAAAAAAAGAAAAAGAGACGTTGAAAGCTGAGATAGAGAGCAATGAAGTTGTGAATGGACATCACCTGAACAGTGAAAACGTCTCATCAAACAGTGATGATGATATACAGAATGGACACATTGGAAAGAAAAGAAATGGAGAGAGAGAATCATCTAGCGAAGACAATACAATTGGAAGTTTGATCAAACACTCGAATCCTGCTCCAAAGAACATGCCTACGAATCCTGCTCCAAAGAACATGCCTAAGTCTAAGAAGCCAAATTCAGAGCCGAAACAACCAACAGAAAATGGAAAAGAATTACCAAAGCAATTTAAGAGTGATAAGGATTCACCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAGCGGCCTATTCGTAGAAGCCCATTAGGTAAGGACAGAAATTATAATAGGTATTGGTGGTTTCGCCGTGATGGAAGGATATTTGTTGAAAACTCTGACTCGAAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTTATGGGTTCACTGAACTGCAAGGGTGAGCGCGAAAGGGCACTGCGAAATCAACTGGAAAAATATTATAGTAGAGTATGTTCTGAACTCCAGAAAAGATCGAAGGATTTGATGCACAGGATTGCAGCGGACGAGTCTGTCCTTCGAAGGTCCACTCGAGTTCGAGCCCCTCCCAGGCAAAACCCTGCACATGCTTTCCTCAATTATGTTAACAAGTGGAAAGTAGATTAG 2157 0.4001 MPLLRRKPFSLADPPKDLKPDEHVYQIRFTKEIFRDYNDYLNRINLYRQRIWMCKVTGKTNLTYEEALVSEKSASEKVQQFPKELRASVLRIIQYSMLPLKDLADFIAEKLEGRFFVGAELHGKKDNELYPCRILKVIPKGVDKFYYEVAWLDKDKNIGEKEEVNAKDLVLKKPLFSRNMLKSFIRESTYRNAPWVLHEEVAKNHGISTDIPEELRGRVCFKNGLLTCSKKRKTEESLAETENCKRKKLDGAEFDGSTEEQQENGQHKVERIKYPIDDLLVKPSPHDPVLANRPSPSRDFNVPMNCVGNLLMVWDFCTTFGKVLHLLPYSLEDFENAICHKDSNIVLLVESHAALFRVLIQDDSEYTEAVKNRRTKSKITMVNWTEYLCHFLEMINVPELRQCEATIKRGHYGLVDINAKLEILYELVNRVIETTIFREKLGEIIEQRHVLGVSRREEVLEDARKRKKEKETLKAEIESNEVVNGHHLNSENVSSNSDDDIQNGHIGKKRNGERESSSEDNTIGSLIKHSNPAPKNMPTNPAPKNMPKSKKPNSEPKQPTENGKELPKQFKSDKDSPEKNSKEQRKEYFEREMEKRPIRRSPLGKDRNYNRYWWFRRDGRIFVENSDSKEWGYYSSKEELDAFMGSLNCKGERERALRNQLEKYYSRVCSELQKRSKDLMHRIAADESVLRRSTRVRAPPRQNPAHAFLNYVNKWKVD 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03907 718 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 598 664 IPR028941 -
Arst3g03907 718 MobiDBLite consensus disorder prediction 502 517 - -
Arst3g03907 718 MobiDBLite consensus disorder prediction 483 501 - -
Arst3g03907 718 ProSiteProfiles DDT domain profile. 304 365 IPR018501 -
Arst3g03907 718 SMART testlast3 304 365 IPR018501 -
Arst3g03907 718 Coils Coil 456 480 - -
Arst3g03907 718 MobiDBLite consensus disorder prediction 550 595 - -
Arst3g03907 718 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Arst3g03907 718 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 716 - -
Arst3g03907 718 Pfam DDT domain 305 362 IPR018501 -
Arst3g03907 718 MobiDBLite consensus disorder prediction 478 595 - -
Arst3g03907 718 MobiDBLite consensus disorder prediction 518 535 - -
Arst3g03907 718 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03907 Arst-Chr3 110538925 110544526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03907 579 663 Homeobox Transcription Factor Family AT1G28420 38.298 1.61e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Arst3g03907 WAC_Acf1_DNA_bd 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03907 - - gmx:100789956 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03907 3 110538925 110544526 Arst3g03907 3 110538925 110544526 ECH
Arst3g03908 3 110538925 110544520 Arst3g03907 3 110538925 110544526 PCT