Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03863 ATGGACAACAATCAACAATCTCAATCACCATCTATAATGCAAGATCAAGCAATGGTAAGAAGACACTACAGAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCGAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCAGAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTCATGCTTCAGCTTCACAATTTTCTGGCAGTAGTGAGAGTAACAACAACAATTTCAATTATGCTTTTCCTCATTTGTATGGGAATCATAAAAATATGTTTGTTTCTTCCTCTTTGTCTTCGTCTTCGTCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTATGAATTAA 540 0.4241 MDNNQQSQSPSIMQDQAMVRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPEPEIGNNNGQQVPSTTTTISHASASQFSGSSESNNNNFNYAFPHLYGNHKNMFVSSSLSSSSSSSSGFSMQFGGSSSKSPPMN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03863 179 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Arst3g03863 179 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Arst3g03863 179 PANTHER DNA-BINDING DOMAIN 15 149 IPR044808 GO:0003700|GO:0009873
Arst3g03863 179 MobiDBLite consensus disorder prediction 151 179 - -
Arst3g03863 179 MobiDBLite consensus disorder prediction 97 128 - -
Arst3g03863 179 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Arst3g03863 179 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Arst3g03863 179 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Arst3g03863 179 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Arst3g03863 179 MobiDBLite consensus disorder prediction 92 128 - -
Arst3g03863 179 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Arst3g03863 179 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Arst3g03863 179 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03863 Arst-Chr3 109536695 109538976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03863 1 131 AP2-EREBP Transcription Factor Family AT5G13330 61.069 1.01e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Arst3g03863 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03863 - - gmx:100793410 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03863 3 109536695 109538976 Arst3g03863 3 109536695 109538976 ECH
Arst6g02891 6 92419316 92421483 Arst3g03863 3 109536695 109538976 ECH
Arst3g03863 3 109536695 109538976 Arst6g02891 6 92419316 92421483 ECH
Arst3g03863 3 109536695 109538976 Arst3g03863 3 109536695 109538976 PCT