Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03850 ATGCCTTCTCCAATGGTGGATCAGAGGGGAGTTTCTGCTTCATCTCACTTTTTTGATGACATTTCTTTTCGTTCTGAGAGGGATGCTGGAATACGGAAGTTCAAATCCATTCATGATCAATATCCACAAGGAAAAAATGGAATGATAGCATCCCCTGGAAGCAATTTGAATTCTTCATCTGTACTGGAAAGAAGTGCAAAATCTGGTTTGCCAATGTCATGCACCAGTCTATCTATTGAAAATGTGGAACAGCTAAAATTTGGTGGTGAAGGCATTTTTGATGCGCTGATGGTTTCCAAGGAATCATCACATTATCATCACAGATCAAGGTCTGATTTATGTATGCGCTCCGGACCGAACTCACCTGGTGTAATCGGGGACAAGTTTGTTTCCAGTGCAGCCACATGTGAAAGTACTTTATTCTCGAGCTCATTGTCTGATATGTTTTGCCAAAAGTTGAGGTTGTTCGGGAAAGATGCTTTATCTGATCAGCCCGATATTATTGATTCTGTTCCCGAGGAAGAGCCTTATAAATCTCTTGAAGAAATAGAGGCTGAAACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCAATGATGAGTCAAGATATAACAATACTAATGCCAGAAAAAATGATGACTTGGAGGATTTTGACTTGTTTAGCAGTGGGGGAGGCATGGAGCTGGAAAGAGATGAACATCTGAATGCAGGATTAAGAACTAGTGCTCTGGAGGGAGATTCAGGTTTTGTTGGAGGTCCTAAAGGAAAATTTCCTTTTGTCACACAACCTTCTAGAACACTCTTTGTTCGGAACATTAATAGCAACGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATGTATACAGCTTGTAAACATCGTGGTTTTGTCATGATTTCTTATTTTGACCTAAGAGCTGCACAAAGTGCAACGCAAGAACTTCAAAATTGGCCACTGAGGTTAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTTCTGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTATTTCAAATGATGAACTCAAACAGATTTTTGGATTTTATGGAGATATTAAAGAAATTTTTGAATCTCCTGAAATGAAACAGCACAAATTTATAGAGTTTTATGATGTACGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGGTTGACATTGCTGGGAAGCAGATCAAGATTGAACCAGGACATCCTAGTTTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAGAATATTATTGACAACTTAGCACTGAGACAGAAGACAACTGTGTCTCCTGGAGTGATTGGGTCTGGCTTGGAAAATGGTTACAATCAGGGATTTCAATCTGGAATGGCGCAACCTTTAAACACATATACTGATAATGCATTTGGACATATAAATTCTAGCATTCACAACACAGTGAGAGGGTCATCAGCTTCAAATGTTTCTGGCGTTTCTGAGTCCAATATATTTGTTGACGCAATAAAATTTGCTTCTAGTCCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATACTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAGTGTCAATACTGGAGTGACCGAAGCCTCTGACAGCAGGCACAATCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGATCCGGTCACATCATGGACTTTATCAGATGTGGAACAGCTCCAATTTGCATCAGCAGTCTTCGTCAGGTACCATGCTGTGGCAGAAAAGACCATCATTTGTTAATCTTCCACAGATGCCAAGCTTTGCCAGAACACCACCTCATATGTTGAGGTCACAACACATGGACCACAATGTTGCATCAGCACCAGTGTCACCTTGGGGAAGGCAACATTCGCACCTAGCAGAATCCCCTGATGCTTCTGGTTTTGTGGGAAGTGGAGGTTTTCAGGGTTCCTGGCAATTGCTTTCTCCAGAATTTTCTCCTCGCTTGTTTCCTCATGCAAGTCCTAAAGGCACTGAACTGCCATCCAATGCTGGGCAGAGTTCTCCTAAGCATCATGGTTTCCCTGGAAGACATTCTATGAATTCAACGTCAAAATTTGATTCTGCCAATGAACGAATGAGAAGCCTTTATCACCGTAGGAGTGAAACAAACAATGCTGATAAAAAACAATTTGAGCTTGACCTAGGTCGCATAATGCAGGGGGAAGACACCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCGTTGTAGGGGAACTTACGATTTTCTGTATTTGCCAATTGACTTCAAGAATAAATGTAATGTTGGTTATGCATTTATAAATATGATCGATGCTGCTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCCAGAGCCTTTTCCCATGGGTACCAATATTAGAGTGAGACCTGGAAAATCTCGCACTGCTGGTAATGACGAAAGTCGCAACCAACCAAGTCCAAGAATTTTGATAAATGTAGAGTCTCCTAATGGACTTGACTCTGCTTAG 2826 0.4122 MPSPMVDQRGVSASSHFFDDISFRSERDAGIRKFKSIHDQYPQGKNGMIASPGSNLNSSSVLERSAKSGLPMSCTSLSIENVEQLKFGGEGIFDALMVSKESSHYHHRSRSDLCMRSGPNSPGVIGDKFVSSAATCESTLFSSSLSDMFCQKLRLFGKDALSDQPDIIDSVPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDESRYNNTNARKNDDLEDFDLFSSGGGMELERDEHLNAGLRTSALEGDSGFVGGPKGKFPFVTQPSRTLFVRNINSNVDDSELKALFEQYGDIRTMYTACKHRGFVMISYFDLRAAQSATQELQNWPLRLRKLDIHYSIPKVNASEKDIGHGTLMLSGLDSSISNDELKQIFGFYGDIKEIFESPEMKQHKFIEFYDVRAAEAALRALNRVDIAGKQIKIEPGHPSLMQQSHKGQDEPDLGQNIIDNLALRQKTTVSPGVIGSGLENGYNQGFQSGMAQPLNTYTDNAFGHINSSIHNTVRGSSASNVSGVSESNIFVDAIKFASSPRFHPHSLPEYHDTLANGSPYNFSSTISNMTSSVNTGVTEASDSRHNQGMSSTGNLAEFNAGGNGIRSHHGLYQMWNSSNLHQQSSSGTMLWQKRPSFVNLPQMPSFARTPPHMLRSQHMDHNVASAPVSPWGRQHSHLAESPDASGFVGSGGFQGSWQLLSPEFSPRLFPHASPKGTELPSNAGQSSPKHHGFPGRHSMNSTSKFDSANERMRSLYHRRSETNNADKKQFELDLGRIMQGEDTRTTLMIKNIPNKYTSKMLLAAIDERCRGTYDFLYLPIDFKNKCNVGYAFINMIDAAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRVRPGKSRTAGNDESRNQPSPRILINVESPNGLDSA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03850 941 CDD RRM1_MEI2_like 269 344 IPR034453 -
Arst3g03850 941 MobiDBLite consensus disorder prediction 916 941 - -
Arst3g03850 941 SUPERFAMILY RNA-binding domain, RBD 776 861 IPR035979 GO:0003676
Arst3g03850 941 Gene3D - 264 352 IPR012677 -
Arst3g03850 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Arst3g03850 941 FunFam Protein MEI2-like 1 354 445 - -
Arst3g03850 941 Pfam RNA recognition motif 2 774 870 IPR007201 -
Arst3g03850 941 PANTHER RNA RECOGNITION MOTIF-CONTAINING 82 925 - -
Arst3g03850 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 332 IPR000504 GO:0003723
Arst3g03850 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Arst3g03850 941 MobiDBLite consensus disorder prediction 697 737 - -
Arst3g03850 941 CDD RRM3_MEI2_like 777 862 IPR034454 -
Arst3g03850 941 MobiDBLite consensus disorder prediction 654 675 - -
Arst3g03850 941 Gene3D - 353 445 IPR012677 -
Arst3g03850 941 MobiDBLite consensus disorder prediction 889 941 - -
Arst3g03850 941 SMART rrm1_1 271 339 IPR000504 GO:0003723
Arst3g03850 941 SMART rrm1_1 776 852 IPR000504 GO:0003723
Arst3g03850 941 SMART rrm1_1 356 424 IPR000504 GO:0003723
Arst3g03850 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Arst3g03850 941 SUPERFAMILY RNA-binding domain, RBD 268 426 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03850 Arst-Chr3 109387647 109395437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03850 268 438 Eukaryotic Initiation Factors Gene Family AT1G71770 24.615 1.75e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03850 - - gmx:106798747 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03850 3 109387647 109395437 Arst3g03850 3 109387647 109395437 ECH
Arst3g03851 3 109387647 109395437 Arst3g03850 3 109387647 109395437 PCT