Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03818 ATGGAAGATACTGGAGATGGAAGTTTGTTAAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATATGAAGATGGAATCAGAGAGTAGTAGTAAAAACAAGAATATTATTGGTGAAAACAACAACAAAAACAGTAACAATAATCTCAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAACGAATTGCAATCAATGCCTCCAACGGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCAGCAGCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCACTTCTTCATTGCCAACTCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGTGATCAGAAGCCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGGTTAGATATCCAGCAGGCTGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCCGGCTTCCATAACATCATTTAG 813 0.4219 MEDTGDGSLLNSYDDYSDHDMVEDMKMESESSSKNKNIIGENNNKNSNNNLNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPPTAPASSLHHPLTPTNNNTATLPPAAASLPSRMMMKETASCPTSSLPTPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNII 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03818 270 CDD bHLH_AtAMS_like 67 131 - -
Arst3g03818 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 137 IPR036638 GO:0046983
Arst3g03818 270 Pfam Helix-loop-helix DNA-binding domain 71 113 IPR011598 GO:0046983
Arst3g03818 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Arst3g03818 270 MobiDBLite consensus disorder prediction 24 64 - -
Arst3g03818 270 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 259 - -
Arst3g03818 270 MobiDBLite consensus disorder prediction 126 153 - -
Arst3g03818 270 SMART finulus 70 119 IPR011598 GO:0046983
Arst3g03818 270 MobiDBLite consensus disorder prediction 32 64 - -
Arst3g03818 270 Gene3D - 54 128 IPR036638 GO:0046983
Arst3g03818 270 FunFam BHLH transcription factor 60 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03818 Arst-Chr3 108810893 108814460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03818 65 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 70.787 9.30e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst3g03818 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03818 - - aip:107634598 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03818 3 108810893 108814460 Arst3g03819 3 108810893 108813896 PCT