Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03812 ATGTTATCTAACTTTCTCACTATTCAAGTGATACTGACAGATATTCCTCGATACAAAAAAGACCAATACCGAGTCACTCTTTATGATCCCTATTATGTTGCAAGACAAATGGATTTCTGTCAAGCTCTTGCAACACCATTTCCTAGCAAAACCCCTCCTCTCTGCAAAATAAACTTCAACAGGAAGAAAGGAATTGACAAGTGTCTCGATCATAATGACTATTATTCTCGCTCTGATCGATCACTAGAGAACATCTTCAAGGGACTCGTCAAGTCTTTTCCAGATTCCCTTGAAATGCTGACTTCAAAAACTTCAAAAAGAAAAACTGAGCCATCGAAGCACCAAAAAGACAAAAAGATACTAAAAGTCTCAAAGGTTTCCCAAACCAACAAGGTAGTAGATGAACTTATGGCTGAATTTGCTGATCTAGGCAATAGTGGTTTGTCTCCTGATAAGCAACAATATGATGAGAAAAATATCCATAGAAGGGTCTATGATGCTCTAAACATTCTTATGACAATGGATATTATTTCGAAGGATAAAAGGGAAATACAATGGAAGGGTTTTCTTCGTACTAGAATGAACGATATTGAAGAACTAAAGATTTGTAGACAACCTCAAGTTTTGCTATTTTTATCAAAGTAG 645 0.3597 MLSNFLTIQVILTDIPRYKKDQYRVTLYDPYYVARQMDFCQALATPFPSKTPPLCKINFNRKKGIDKCLDHNDYYSRSDRSLENIFKGLVKSFPDSLEMLTSKTSKRKTEPSKHQKDKKILKVSKVSQTNKVVDELMAEFADLGNSGLSPDKQQYDEKNIHRRVYDALNILMTMDIISKDKREIQWKGFLRTRMNDIEELKICRQPQVLLFLSK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03812 214 SMART E2F_TDP_2 92 188 IPR003316 GO:0005667|GO:0006355
Arst3g03812 214 Pfam E2F/DP family winged-helix DNA-binding domain 96 188 IPR003316 GO:0005667|GO:0006355
Arst3g03812 214 PANTHER TRANSCRIPTION FACTOR DP 127 205 IPR015648 GO:0005667|GO:0051726
Arst3g03812 214 SUPERFAMILY "Winged helix" DNA-binding domain 119 189 IPR036390 -
Arst3g03812 214 Gene3D - 101 194 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03812 Arst-Chr3 108650120 108653974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03812 121 204 E2F-DP Transcription Factor Family AT5G02470 44.706 2.90e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Arst3g03812 E2F_TDP 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03812 K04683 - mof:131168561 119.398