Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03765 ATGAAGACACACAATTTCTTGAAGTCCTTTCATTTTACTTTGGTTAACTCTCTTCTCTTTTTTCCATGCAATTTGAGAGCAGAGAAGAGTGAAGCAAACAATAGAGGAAGTGGAAGCATTCATTTAGCTATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGAAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGCGAACTCCATTCCAAGACTGCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAACTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1356 0.4676 MKTHNFLKSFHFTLVNSLLFFPCNLRAEKSEANNRGSGSIHLAMDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKEGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03765 451 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Arst3g03765 451 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Arst3g03765 451 MobiDBLite consensus disorder prediction 431 451 - -
Arst3g03765 451 MobiDBLite consensus disorder prediction 369 400 - -
Arst3g03765 451 MobiDBLite consensus disorder prediction 222 242 - -
Arst3g03765 451 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Arst3g03765 451 FunFam Squamosa promoter-binding-like protein 14 149 219 - -
Arst3g03765 451 Pfam SBP domain 158 231 IPR004333 GO:0003677
Arst3g03765 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 107 441 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03765 Arst-Chr3 106049020 106052456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03765 44 451 SBP-box Gene Family AT5G50670 40.515 1.20e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst3g03765 SBP 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03765 - - ahf:112790946 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03765 3 106049020 106052456 Arst3g03765 3 106049020 106052456 ECH
Arst3g03765 3 106049020 106052456 Arst3g03765 3 106049020 106052456 PCT