LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g03748	ATGTGGCGGTCGGCGATTTCAGAACGACAAAGGGCATTCTCGAAGCTTCTATTCGCCTTCACAGTGTCCTGCAACATGGGCGGCGGCCCTCGAACCTTCCCCGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCGCGCCCGTGACAAAGAGAAGAGACTTCTCGAACATGAGAAACAGATCTATCAGGCTCGCATTCGCTCCCACATACGCTCCCACCTCGCACCCGACAACTCAACCGCCACCGCCGCCACCACCCACGGCCCTATCTCCCCCACTGACCACATTAGGGCCCTCGCCAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACAACGACGACGGTCCCCTAACGGTTTCTTCTTCTTCTTGTTCTTCTCCCACGCGGCAGCAAGGTTCGATTGAGGCGCCGGTGGATTTGCGGAAGCTGATACAAGAGAAACGGAACCCCAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCATTCTGTTTCTGAGGTGAATTCCGGTGTTGGTAGCAGTAAGAAACTTGCGCCTGCTGGGAGGAGAAGATTTTGGAGGAACGATAGTACTTCTTCGAGTGAGAGTGAATCCGAGGATGAGAACGATTCGAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGTAATGCGTCTTTGAGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGATGAAGAGGCTGATTTTGCAGAACAGGTTGAGCTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGGAAGAGTACAGGGTTGAGGACCAAGAATCCATCCTAACCCAATCAAGATTTGATGAGTGCGGTATATCGCCATTGACAGTCAAGGCTCTCTCTTCAGCTGGTTATATCCACCTGACCCGGGTGCAAGAGGCAAGCCTTTCTGTTTGCCTTGAGGGTAAGGATGCTCTGGTCAAAGCTAAAACTGGCACGGGAAAAAGTGCAGCATTTTTGCTTCCTGCCATTGAAACAGTTTTGAAAGCTATGAATAGCAAGTCGCGTCAAAATGTGCCACCTATATTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGCTTTGCTCAAGTATCAAGATGGCATTGGTGTACAAACTCTCGTAGGAGGGGTGCGATTTAAAGTTGACCAAAAGCGTCTTGAATCCGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGATCATATTGAGAATAAGTCTGGACTATCTGTGCGATTGATGAGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGATTTCGAAAGGACGTAGAAAAGATTGTTGACTGTGTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCAACCATCCCAAAGGAGGTCCGCCGTGTATCTCAACTTGTTTTGAAAAGGGAACATGCATACATTGATACAGTTGGTATGGGTTGTCTGGAAACTCCAGTGAAGGTCAAGCAATCTTTTCTTATTGCTCCACAGGAATCACATTTTCAAATAGTACACCATATTTTAAAGGAGCATGTCATGCAAACACCTGATTATAAGGTTATTATTTTCTGTGTTGCTGGAATGGTAACATCACTTATGTATCAACTTCTCCGTGAAATGAAAATGAACGTGAGGGAGCTACACTCTCGAAAACCCCAACTGTATCGAACTCGCATATCAGATGAGTTTCGGGAATCCAAACAACTGATTCTTGTCTCATCTGATGTTTCATCTCGTGGAATGAATTATCCCGATGTTACTTTAGTCATACAGGTGGGTATTCCTTCTGATCGTGAACAATATATACATCGTCTTGGAAGAACTGGACGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAATATTTTTTAGATGAAATCAAGGATCTTCCTCTAGAGAGATTCCCTTTTCCAGATATAGATCCACAGACAAAGCTTAAGATAGAACATTCCATGGGAAAGATAGACAGTGACGTCAAAGAAGCCGCATATCATGCTTGGCTGGGTTATTACAACTCAATTAGGGAAATTGGAAGGGAGAAGTCCACCATAGCTGAGCTTGCAAACCGGTTTTCTGCATCAATTGGTTTACAGAGGCCTCCTGCGCTCTTTCGAAAGACTGCTTTAAAGATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTCGATAA	2271	0.4575	MWRSAISERQRAFSKLLFAFTVSCNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQIYQARIRSHIRSHLAPDNSTATAATTHGPISPTDHIRALANRFMKEGAEDLWNNDDGPLTVSSSSCSSPTRQQGSIEAPVDLRKLIQEKRNPNSMNSSGNFGQRRGYHSVSEVNSGVGSSKKLAPAGRRRFWRNDSTSSSESESEDENDSRVNNWDVRKMGSNASLRKHDLKRERRVMPKPYDEEADFAEQVELIKYEINKRKLKQKEMEEYRVEDQESILTQSRFDECGISPLTVKALSSAGYIHLTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMNSKSRQNVPPIFVLILCPTRELASQIAAEAKALLKYQDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGLSVRLMSLQMLVLDEADHLLDLGFRKDVEKIVDCVPRQRQSLMFSATIPKEVRRVSQLVLKREHAYIDTVGMGCLETPVKVKQSFLIAPQESHFQIVHHILKEHVMQTPDYKVIIFCVAGMVTSLMYQLLREMKMNVRELHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLERFPFPDIDPQTKLKIEHSMGKIDSDVKEAAYHAWLGYYNSIREIGREKSTIAELANRFSASIGLQRPPALFRKTALKMGLKDIPGIRIRR	756

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g03748	756	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	318	501	IPR014001	-
	Arst3g03748	756	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	535	681	IPR001650	-
	Arst3g03748	756	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	364	657	IPR027417	-
	Arst3g03748	756	Gene3D	-	511	734	IPR027417	-
	Arst3g03748	756	MobiDBLite	consensus disorder prediction	112	221	-	-
	Arst3g03748	756	SMART	ultradead3	306	519	IPR014001	-
	Arst3g03748	756	CDD	SF2_C_DEAD	516	649	-	-
	Arst3g03748	756	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	287	315	IPR014014	GO:0003724
	Arst3g03748	756	Gene3D	-	253	502	IPR027417	-
	Arst3g03748	756	Coils	Coil	43	63	-	-
	Arst3g03748	756	MobiDBLite	consensus disorder prediction	119	138	-	-
	Arst3g03748	756	MobiDBLite	consensus disorder prediction	197	217	-	-
	Arst3g03748	756	Pfam	DEAD/DEAH box helicase	311	489	IPR011545	GO:0003676\|GO:0005524
	Arst3g03748	756	PANTHER	RNA HELICASE	238	680	-	-
	Arst3g03748	756	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	238	471	IPR027417	-
	Arst3g03748	756	SMART	helicmild6	559	640	IPR001650	-
	Arst3g03748	756	MobiDBLite	consensus disorder prediction	152	181	-	-
	Arst3g03748	756	Pfam	Helicase conserved C-terminal domain	535	639	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g03748	Arst-Chr3	105597917	105601552	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g03748	278	665	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.173	8.55e-42	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g03748	-		-	pcin:129284459	1061.6