Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03742 ATGGCATTCAGCGGGACACAACAGAAATGTAAGGCTTGTGACAAAGTTGTTCATTTCGTTGAATCCCAATCTGCAGATGGCGCTATTTATCACAAGAACTGCTTCAGATGCAGCCACTGCAATGGCCGTCTCGCGATAAGCAACTACTCATCGATTGAGGGAGTTTTATATTGCAAGCCTCACTTTGAGCAACTTTTTAAGGAAAATGGTGCTACCTTGATGAGGAGATCGCTGTCATCTGGAAAGCAACAACAGCCTGATGTGCCCAAGAAACAACCAAGCAGACTGGCCTCCTTCTTCTCTGGGACTCAGGATAAATGTTCAGTTTGTAAGAAAACTGTCTATCCATTGGAAAAGTTGACTGTGGAAGGGGAGTTTTTCCACAAATCATGCTTTAAGTGCACACATGGAGGGTGTTCCCTGAACCCTTCATCGTATGCAGCATTGGATGGATTCCTTTATTGCAAGCCACATTTCTCTCAGCTCTTCAAAGAGAAAGGTAGCTACACCCATCTCTCCAAGACAGCTTCCCTGAGGAAGCAGCAAGAAGAAGACAAGGCCGACAAAGCCGACACAACGGAAGACACAGACCCGGCCGCCGCACCCACATCGGCAGAGGCAGCAGCTGAAGCTGAGGATGCTCCCGTCACACCGCAAGATCAGTAA 666 0.4775 MAFSGTQQKCKACDKVVHFVESQSADGAIYHKNCFRCSHCNGRLAISNYSSIEGVLYCKPHFEQLFKENGATLMRRSLSSGKQQQPDVPKKQPSRLASFFSGTQDKCSVCKKTVYPLEKLTVEGEFFHKSCFKCTHGGCSLNPSSYAALDGFLYCKPHFSQLFKEKGSYTHLSKTASLRKQQEEDKADKADTTEDTDPAAAPTSAEAAAEAEDAPVTPQDQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03742 221 Gene3D Cysteine Rich Protein 101 171 - -
Arst3g03742 221 Gene3D Cysteine Rich Protein 4 72 - -
Arst3g03742 221 FunFam LIM domain and actin-binding 1 101 171 - -
Arst3g03742 221 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Arst3g03742 221 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Arst3g03742 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Arst3g03742 221 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Arst3g03742 221 MobiDBLite consensus disorder prediction 177 195 - -
Arst3g03742 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Arst3g03742 221 MobiDBLite consensus disorder prediction 173 221 - -
Arst3g03742 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Arst3g03742 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Arst3g03742 221 Pfam LIM domain 107 162 IPR001781 -
Arst3g03742 221 Pfam LIM domain 10 65 IPR001781 -
Arst3g03742 221 FunFam LIM domain and actin-binding 1 4 73 - -
Arst3g03742 221 CDD LIM1_SF3 6 68 - -
Arst3g03742 221 PANTHER OS06G0237300 PROTEIN 99 216 - -
Arst3g03742 221 SMART lim_4 9 61 IPR001781 -
Arst3g03742 221 SMART lim_4 106 158 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03742 Arst-Chr3 105446799 105452294 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Arst3g03742 LIM 1.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03742 - K24413 gmx:100499865 291.967