Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03660 ATGGGATTCCCAGTGGGTTACACGGAGCTTCTGTTCCCAAAGCCTGTTCTTCAAATCCTCTCCGTATTGGGTTACATAAGAAGGTTGATTTTCACCTTCTTCAGCTACACGGGGCTCCCCAACTTCCTCGAACCCGATGACACCGATAACACAATGCCCCAATTCCACCCCGTCTCGGAGCTCCTCTTCGGAGAGATCCTTCCCGTGGTGAAGTTCTCGGAGCTGGTGGAGCCGCCTGAGAGGTGCGCCGTGTGCCTCACGGACTTCGAGCAGGAGGATGAGATCCGACGGCTGATGAACTGCACGCACGTGTTCCACCGGGGTTGTGTGGACCGTTGGATGGGTTACGATCAGAGCACGTGCCCTCTGTGCAGGACACCCTTCATTCCAGATGATTTCTTCAATCACGGCCTCTGGGCTGCTTCTGCCATTCCCGAATTTCATGCTTAG 450 0.5511 MGFPVGYTELLFPKPVLQILSVLGYIRRLIFTFFSYTGLPNFLEPDDTDNTMPQFHPVSELLFGEILPVVKFSELVEPPERCAVCLTDFEQEDEIRRLMNCTHVFHRGCVDRWMGYDQSTCPLCRTPFIPDDFFNHGLWAASAIPEFHA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03660 149 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Arst3g03660 149 SUPERFAMILY RING/U-box 66 131 - -
Arst3g03660 149 SMART ring_2 82 124 IPR001841 -
Arst3g03660 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 131 IPR013083 -
Arst3g03660 149 Pfam Ring finger domain 81 125 IPR001841 -
Arst3g03660 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 63 131 - -
Arst3g03660 149 CDD RING-H2_RHA1-like 80 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03660 Arst-Chr3 101383430 101384114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03660 1 143 C3H Transcription Factor Family AT1G63840 56.494 4.34e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03660 K16281 - jre:109014495 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01353 5 14429759 14431102 Arst3g03660 3 101383430 101384114 PCT