Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03657 ATGTCTCAGAACGGGAAGCTCATGCCGAATCTCGACCAGCACAGCACCAAGCTCCTCAACCTCACTGTTCTTCAGCGCATCCACACCTTCGTCGAGGAAATCCTCATCACCGCTGCATACGTTAGCTTCTACGAGTTCAACATCGACCTATCCCAATGGAGCCGCAAGGCCGTCGAGGGGTGCAAGATACAAGCTACTGTTCGGAAGACTATGATTTACAAGTTCAAACAACTTCTCTCCGAGGGTCGAGTATATGTAATGAAGCTCTTCTCTGTTGTGCCAAACCAAGGATCTTATAGGGCCACTAGGCATCAATTTAAGTTGATTTTCCAGTTTAGGACCACTGTTAGGGATGCTATCTGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCATTGAACTTTTGGAAACCAAAGAGGATTCTGATTTCTTAGTTGATGTGGTGGGTCTGTTGGTCTCTGTGTCGGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTGTGATGGAACTTGCTGAAAATGATCACAGGATTCGGTGTGCCTTATTTGGTGAACATGTTGACGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAGCCAATTGTGGTTTTACATCTTGCCAAAGTTAAGTTTTTTAGAGGTAGAGTTGGACTTCAGAATGTTATGTTTGGATCGAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTCGGAAAAGTTCTATTCCTCATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCGGAATAGAAGAAGATTTTATGAAGCTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACCGGGCTGGAACCTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAAGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAGGCAGAATTTGGGATATATTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGTTTAGAGTAAAGGTGTTAGTTGAGGATTCCACTGGTGTTTCTATTTTTGTCCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAATAA 1149 0.4265 MSQNGKLMPNLDQHSTKLLNLTVLQRIHTFVEEILITAAYVSFYEFNIDLSQWSRKAVEGCKIQATVRKTMIYKFKQLLSEGRVYVMKLFSVVPNQGSYRATRHQFKLIFQFRTTVRDAICDFIPKSALTISPFIELLETKEDSDFLVDVVGLLVSVSEEKEYDKDGKKMKMAVMELAENDHRIRCALFGEHVDELNRFLSSGYAEQPIVVLHLAKVKFFRGRVGLQNVMFGSKLGFNLDIPEVAAFRKSSIPHGVSASQPIGIVGSGKNIGIEEDFMKLTPRCTVKSLDDNNRAGTFVVLAKIAEIVEDGPWWYSACVCGRGVQAEFGIYFCQFCNIHVTNVTPRFRVKVLVEDSTGVSIFVLFDREASYLLNKTCAQLFE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03657 382 SUPERFAMILY Nucleic acid-binding proteins 283 382 IPR012340 -
Arst3g03657 382 Pfam Replication factor-A C terminal domain 298 380 IPR013955 -
Arst3g03657 382 SUPERFAMILY Nucleic acid-binding proteins 143 250 IPR012340 -
Arst3g03657 382 Pfam Domain of unknown function DUF223 59 119 IPR003871 -
Arst3g03657 382 Gene3D - 124 257 IPR012340 -
Arst3g03657 382 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 10 60 IPR010334 GO:0000290|GO:0008047|GO:0043085
Arst3g03657 382 SUPERFAMILY PH domain-like 19 61 - -
Arst3g03657 382 CDD RPA1_DBD_C 298 382 IPR047192 -
Arst3g03657 382 Gene3D - 268 382 IPR012340 -
Arst3g03657 382 CDD RPA1_DBD_B_like 149 250 - -
Arst3g03657 382 SUPERFAMILY Nucleic acid-binding proteins 60 116 IPR012340 -
Arst3g03657 382 Pfam Dcp1-like decapping family 17 61 IPR010334 GO:0000290|GO:0008047|GO:0043085
Arst3g03657 382 Gene3D - 42 119 IPR012340 -
Arst3g03657 382 CDD RPA1_DBD_A_like 59 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03657 Arst-Chr3 101333297 101340257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03657 46 380 Core DNA Replication Machinery Family AT5G08020 23.563 5.23e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03657 - - ahf:112790867 591.652