LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g03655	ATGTCTCAGAACGGGAAGCTCATGCCGAATCTCGACCAGCACAGCACCAAGCTCCTCAACCTCACTGTTCTTCAGCGCATCCACACCTTCGTCGAGGAAATCCTCATCACCGCTGCATACGTTAGCTTCTACGAGTTCAACATCGACCTATCCCAATGGAGCCGCAAGGCCGTCGAGATTAATCCTGAGAAGGAAGCATGGAACCTCAAAGTTAGGGTGATTAGGCTTTGGACTGTTTCTACTTTCACTGGTCAGCTTGTCCCAAACTCCATGGAAATGATTTTGGTTGATGAATCTGGGTGCAAGATACAAGCTACTGTTCGGAAGACTATGATTTACAAGTTCAAACAACTTCTCTCCGAGGGTCGAGTATATGTAATGAAGCTCTTCTCTGTTGTGCCAAACCAAGGATCTTATAGGGCCACTAGGCATCAATTTAAGTTGATTTTCCAGTTTAGGACCACTGTTAGGGATGCTATCTGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCATTGAACTTTTGGAAACCAAAGAGGATTCTGATTTCTTAGTTGATGTGGTGGGTCTGTTGGTCTCTGTGTCGGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTGTGATGGAACTTGCTGAAAATGATCACAGGATTCGGTGTGCCTTATTTGGTGAACATGTTGACGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAGCCAATTGTGGTTTTACATCTTGCCAAAGTTAAGTTTTTTAGAGGTAGAGTTGGACTTCAGAATGTTATGTTTGGATCGAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTCGGAAAAGTTCTATTCCTCATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCGGAATAGAAGAAGATTTTATGAAGCTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACCGGGCTGGAACCTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAAGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAGGCAGAATTTGGGATATATTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGTTTAGAGTAAAGGTGTTAGTTGAGGATTCCACTGGTGTTTCTATTTTTGTCCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAATAA	1269	0.4247	MSQNGKLMPNLDQHSTKLLNLTVLQRIHTFVEEILITAAYVSFYEFNIDLSQWSRKAVEINPEKEAWNLKVRVIRLWTVSTFTGQLVPNSMEMILVDESGCKIQATVRKTMIYKFKQLLSEGRVYVMKLFSVVPNQGSYRATRHQFKLIFQFRTTVRDAICDFIPKSALTISPFIELLETKEDSDFLVDVVGLLVSVSEEKEYDKDGKKMKMAVMELAENDHRIRCALFGEHVDELNRFLSSGYAEQPIVVLHLAKVKFFRGRVGLQNVMFGSKLGFNLDIPEVAAFRKSSIPHGVSASQPIGIVGSGKNIGIEEDFMKLTPRCTVKSLDDNNRAGTFVVLAKIAEIVEDGPWWYSACVCGRGVQAEFGIYFCQFCNIHVTNVTPRFRVKVLVEDSTGVSIFVLFDREASYLLNKTCAQLFE	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g03655	422	Pfam	Domain of unknown function DUF223	92	159	IPR003871	-
	Arst3g03655	422	SUPERFAMILY	Nucleic acid-binding proteins	59	156	IPR012340	-
	Arst3g03655	422	CDD	RPA1_DBD_A_like	69	156	-	-
	Arst3g03655	422	Pfam	Replication factor-A C terminal domain	338	420	IPR013955	-
	Arst3g03655	422	SUPERFAMILY	PH domain-like	19	59	-	-
	Arst3g03655	422	PANTHER	TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1	10	59	IPR010334	GO:0000290\|GO:0008047\|GO:0043085
	Arst3g03655	422	Gene3D	-	6	58	IPR011993	-
	Arst3g03655	422	Gene3D	-	59	159	IPR012340	-
	Arst3g03655	422	Pfam	Dcp1-like decapping family	17	59	IPR010334	GO:0000290\|GO:0008047\|GO:0043085
	Arst3g03655	422	Gene3D	-	308	422	IPR012340	-
	Arst3g03655	422	SUPERFAMILY	Nucleic acid-binding proteins	323	422	IPR012340	-
	Arst3g03655	422	CDD	RPA1_DBD_B_like	189	290	-	-
	Arst3g03655	422	SUPERFAMILY	Nucleic acid-binding proteins	183	290	IPR012340	-
	Arst3g03655	422	CDD	RPA1_DBD_C	338	422	IPR047192	-
	Arst3g03655	422	Gene3D	-	164	297	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g03655	Arst-Chr3	101333297	101340257	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g03655	58	420	Core DNA Replication Machinery Family	AT5G08020	23.873	8.60e-17	80.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g03655	-		-	ahf:112790867	591.652