Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03510 ATGGGCCTTGATAGGACCACAATTGAAAAGTACCCAAAGACTCTTATCGGTGAGAGCGGGCGCTTGTTGAAGCCCACTGATAATACCTGCTCAATATGCCTCTGTGAATATGAGCCTAAAGATACTTTGAGGACCATACCTGAGTGCAACCATTATTTCCATGCTGAGTGCATAGACGAGTGGCTCAGAATGAATGGAACCTGCCCCTTGTGCAGGAACACACCGGGGGCATTATCTAGAGTTAGCCCTTCTTTCTCTTCTTTGTCTCATCACACTTCATCAATGTCCTCTACGCCATAG 300 0.4667 MGLDRTTIEKYPKTLIGESGRLLKPTDNTCSICLCEYEPKDTLRTIPECNHYFHAECIDEWLRMNGTCPLCRNTPGALSRVSPSFSSLSHHTSSMSSTP 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03510 99 ProSiteProfiles Zinc finger RING-type profile. 30 72 IPR001841 -
Arst3g03510 99 SMART ring_2 30 71 IPR001841 -
Arst3g03510 99 CDD RING-H2_EL5-like 30 72 - -
Arst3g03510 99 SUPERFAMILY RING/U-box 23 75 - -
Arst3g03510 99 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 75 IPR046948 -
Arst3g03510 99 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Arst3g03510 99 MobiDBLite consensus disorder prediction 80 99 - -
Arst3g03510 99 Pfam Ring finger domain 28 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03510 Arst-Chr3 92154844 92155307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03510 1 88 C3H Transcription Factor Family AT5G07040 55.682 2.90e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03510 - - ahf:112732430 176.407